LSD2: Multiple comparisons, "Least significant difference" and...

In easynem: Nematode Community Analysis

Multiple comparisons, "Least significant difference" and Adjust P-values (two-factor)

Description

The LSD2() is used to perform "Least significant difference" for grouped data and create compare2-class. This function is only applicable to two-factor analysis, see LSD for a single factor version of the function.

Usage

LSD2(data, .group1, .group2, y, ...)

Arguments

data	An easynem-class data.
.group1	Grouping variables factor 1.
.group2	Grouping variables factor 2.
y	Dependent variable (numeric data).
...	Other parameters for LSD.test.

Details

To facilitate code interpretation, It is recommended to use this function in conjunction with the calc_compare2 function:

nem_compare <- nem |> calc_compare2(.group1 = con_crop, .group2 = season, y = pH, method = LSD2)

Value

An compare2-class object.

See Also

Other functions related to differential analysis methods: TTest2, TTest, WilcoxTest2, WilcoxTest, KruskalTest2, KruskalTest, LSD, HSD, HSD2.

Examples

nem <- read_nem(tab = easynem_example("nemtab1.csv"),
                tax = easynem_example("nemtax1.csv"),
                meta = easynem_example("nemmeta1.csv"))
nem_test <- nem |>
              calc_compare2(.group1 = con_crop, .group2 = season, y = pH, method = LSD2)
nem_test

easynem documentation built on Nov. 5, 2025, 7:39 p.m.