ecospat.testNichePOSNB: Test AVS Dataset For The Ecospat package
In ecospat: Spatial Ecology Miscellaneous Methods

ecospat.testNichePOSNB

R Documentation

Test AVS Dataset For The Ecospat package

Description

The dataset is contains frequencies of 15 bacterial consortium AVS for 16s site in the Western Swiss Alps along with 4 PCA scores representing environmental axes.

Format

ecospat.testTree is a 16 rows (sites) x 18 collumns (14 AVS + 4 PCA axes) dataframe

Author(s)

Lucie Malard lucie.malard@unil.ch and Olivier Broennimann olivier.broennimann@unil.ch

References

L.A. Malard, H.K. Mod, N. Guex, O. Broennimann, E. Yashiro, E. Lara, E.D.A. Mitchell, H. Niculita-Hirzel & A. Guisan. The ecological niche of soil bacterial, archaeal, fungal and protist communities along environmental gradients in the Alps. 2021. Accepted in Soil Biology and Biochemistry.

Examples

data(ecospat.testNichePOSNB)
df<-ecospat.testNichePOSNB
ecospat.nichePOSNB(df,colvar=c(2),colfreq = 6:17) # 1 axes
ecospat.nichePOSNB(df,colvar=c(2:3),colfreq = 6:17) # 2 axes
ecospat.nichePOSNB(df,colvar=c(2:5),colfreq = 6:17) # 4 axes #

ecospat documentation built on July 4, 2024, 5:06 p.m.