ecospat.testNichePOSNB: Test AVS Dataset For The Ecospat package

ecospat.testNichePOSNBR Documentation

Test AVS Dataset For The Ecospat package

Description

The dataset is contains frequencies of 15 bacterial consortium AVS for 16s site in the Western Swiss Alps along with 4 PCA scores representing environmental axes.

Format

ecospat.testTree is a 16 rows (sites) x 18 collumns (14 AVS + 4 PCA axes) dataframe

Author(s)

Lucie Malard lucie.malard@unil.ch and Olivier Broennimann olivier.broennimann@unil.ch

References

L.A. Malard, H.K. Mod, N. Guex, O. Broennimann, E. Yashiro, E. Lara, E.D.A. Mitchell, H. Niculita-Hirzel & A. Guisan. The ecological niche of soil bacterial, archaeal, fungal and protist communities along environmental gradients in the Alps. 2021. Accepted in Soil Biology and Biochemistry.

Examples

data(ecospat.testNichePOSNB)
df<-ecospat.testNichePOSNB
ecospat.nichePOSNB(df,colvar=c(2),colfreq = 6:17) # 1 axes
ecospat.nichePOSNB(df,colvar=c(2:3),colfreq = 6:17) # 2 axes
ecospat.nichePOSNB(df,colvar=c(2:5),colfreq = 6:17) # 4 axes #

ecospat documentation built on Nov. 10, 2022, 5:55 p.m.