Nothing
## ----setup, include = FALSE---------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
## ----guineapig P-value--------------------------------------------------------
pt(-2.67,10+10-2)
## ----guineapig----------------------------------------------------------------
library(ecostats)
data(guineapig)
t.test(errors~treatment, data=guineapig, var.equal=TRUE, alternative="less")
## ----guineapig qqplots--------------------------------------------------------
qqenvelope(guineapig$errors[guineapig$treatment=="N"])
qqenvelope(guineapig$errors[guineapig$treatment=="C"])
by(guineapig$errors,guineapig$treatment,sd)
## ----waterQuality scatterplot-------------------------------------------------
data(waterQuality)
plot(quality~logCatchment, data=waterQuality)
## ----waterQuality lm----------------------------------------------------------
data(waterQuality)
fit_qual=lm(quality~logCatchment, data = waterQuality)
summary(fit_qual)
## ----waterQuality approxCI----------------------------------------------------
-11.042+c(-2,2)*1.780
## ----waterQuality CI----------------------------------------------------------
confint(fit_qual)
## ----waterQuality resplots----------------------------------------------------
plot(fit_qual, which=1:2)
## ----waterQuality simenvelope-------------------------------------------------
library(ecostats)
plotenvelope(fit_qual, which=1:2)
## ----guineapigs ttest 2sided--------------------------------------------------
t.test(errors~treatment, data=guineapig, var.equal=TRUE)
## ----guineapigs lm------------------------------------------------------------
ft_guineapig=lm(errors~treatment,data=guineapig)
summary(ft_guineapig)
## ----globalPlants lm----------------------------------------------------------
library(ecostats)
data(globalPlants)
plot(height~lat,data=globalPlants)
ft_height=lm(height~lat,data=globalPlants)
summary(ft_height)
plotenvelope(ft_height,which=1:2)
## ----globalPlants loglm-------------------------------------------------------
plot(height~lat,data=globalPlants,log="y")
globalPlants$logHeight=log10(globalPlants$height)
ft_logHeight=lm(logHeight~lat,data=globalPlants)
summary(ft_logHeight)
plotenvelope(ft_logHeight,which=1:2)
## ----guineapigs ttest log-transform-------------------------------------------
data(guineapig)
guineapig$logErrors=log(guineapig$errors)
ft_logGuineapigs = lm(logErrors~treatment, data=guineapig)
summary(ft_logGuineapigs)
plotenvelope(ft_logGuineapigs)
by(guineapig$logErrors,guineapig$treatment,sd)
## ----guineapigs ttest log-transform slplot------------------------------------
plotenvelope(ft_logGuineapigs,which=3)
## ----waterQuality outliers----------------------------------------------------
data(waterQuality)
ft_water = lm(quality~logCatchment,data=waterQuality)
summary(ft_water)
ft_water2 = lm(quality~logCatchment,data=waterQuality, subset=waterQuality$logCatchment>2)
summary(ft_water2)
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