eggCounts: Hierarchical Modelling of Faecal Egg Counts

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An implementation of hierarchical models for faecal egg count data to assess anthelmintic efficacy. Bayesian inference is done via MCMC sampling using Stan.

Author
Craig Wang [cre, aut], Michaela Paul [aut], Reinhard Furrer [ctb], Trustees of Columbia University [cph] (rstanarm)
Date of publication
2016-11-08 11:10:26
Maintainer
Craig Wang <craig.wang@uzh.ch>
License
GPL (>= 3)
Version
1.2
URLs

View on CRAN

Man pages

echinococcus
Faecal egg count sample
eggCounts-package
Hierarchical modelling of faecal egg counts
epgs
Faecal egg count samples (before and after treatment)
fecr_stan
Modelling the reduction of faecal egg count data
fecrtCI
Compute standard FECRT according to WAAVP guidelines
fec_stan
Modelling of faecal egg count data (one-sample case)
simData1s
Simulate faecal egg count data (1-sample situation)
simData2s
Simulate faecal egg count data (2-sample situation)
stan2mcmc
Convert a Stanfit object to MCMC object
tab1morgan
Abundance of trichostrongyloid eggs in sheep faeces

Files in this package

eggCounts
eggCounts/inst
eggCounts/inst/CITATION
eggCounts/inst/NEWS
eggCounts/inst/chunks
eggCounts/inst/chunks/gpl.txt
eggCounts/inst/chunks/license.stan
eggCounts/exec
eggCounts/exec/ziunpaired.stan
eggCounts/exec/unpaired.stan
eggCounts/exec/paired.stan
eggCounts/exec/zipaired.stan
eggCounts/exec/zinb.stan
eggCounts/exec/nb.stan
eggCounts/tests
eggCounts/tests/testthat
eggCounts/tests/testthat/test.R
eggCounts/src
eggCounts/src/Makevars
eggCounts/src/Makevars.win
eggCounts/src/Modules.cpp
eggCounts/src/include
eggCounts/src/include/models.hpp
eggCounts/NAMESPACE
eggCounts/demo
eggCounts/demo/fecm_stan.R
eggCounts/demo/00Index
eggCounts/data
eggCounts/data/echinococcus.csv.gz
eggCounts/data/tab1morgan.txt.gz
eggCounts/data/epgs.txt.gz
eggCounts/R
eggCounts/R/fecr_models_stan.R
eggCounts/R/printSummary.R
eggCounts/R/fecr_stan.R
eggCounts/R/fec_stan.R
eggCounts/R/simData.R
eggCounts/R/profile.R
eggCounts/R/stanmodels.R
eggCounts/R/waavpMethods.R
eggCounts/R/stan2mcmc.R
eggCounts/R/zzz.R
eggCounts/R/fec_models_stan.R
eggCounts/MD5
eggCounts/DESCRIPTION
eggCounts/man
eggCounts/man/fec_stan.Rd
eggCounts/man/simData2s.Rd
eggCounts/man/epgs.Rd
eggCounts/man/fecrtCI.Rd
eggCounts/man/simData1s.Rd
eggCounts/man/echinococcus.Rd
eggCounts/man/tab1morgan.Rd
eggCounts/man/fecr_stan.Rd
eggCounts/man/eggCounts-package.Rd
eggCounts/man/stan2mcmc.Rd
eggCounts/cleanup
eggCounts/tools
eggCounts/tools/make_cpp.R
eggCounts/cleanup.win