interactionPlot: Compare two interaction matrices

In eicm: Explicit Interaction Community Models

Compare two interaction matrices

Description

Visually compare two interaction (adjacency) matrices and return accuracy statistics

Usage

interactionPlot(
  estimated.adjacency.matrix,
  true.adjacency.matrix,
  excluded.interactions = NULL,
  labels = TRUE,
  noplot = FALSE,
  legend = TRUE,
  ...
)

Arguments

estimated.adjacency.matrix	the interaction matrix of the model of interest.
true.adjacency.matrix	the interaction matrix of the model to compare with (usually, the one used for simulating the data).
excluded.interactions	a binary species x species matrix telling which interactions were excluded a priori.
labels	logical. Add default axis labels and title?
noplot	logical. Do plots? If TRUE, it will return the accuracy statistics only.
legend	logical. Plot legend?
...	further arguments to pass to plot.

Value

A vector with accuracy statistics.

eicm documentation built on May 31, 2023, 5:20 p.m.