elementR: A Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures

Aims to facilitate the reduction of elemental microchemistry data from solid-phase LA-ICPMS analysis (laser ablation inductive coupled plasma mass spectrometry). The elementR package provides a reactive and user friendly interface for conducting all steps needed for an optimal data reduction while leaving maximum control for user.

Author
Charlotte Sirot, Francois Guilhaumon, Franck Ferraton, Audrey Darnaude, Jacques Panfili, Amber Child
Date of publication
2016-08-31 01:20:31
Maintainer
Charlotte Sirot <charlott.sirot@gmail.com>
License
GPL (>= 2)
Version
1.1

View on CRAN

Man pages

elementR_data
Object elementR_data
elementR-package
A Shiny Application for Reducing Elemental LA-ICPMS Data from...
elementR_project
Object elementR_project
elementR_rep
Object elementR_rep
elementR_repSample
object elementR_repSample
elementR_repStandard
Object elementR_repStandard
elementR_sample
Object elementR_sample
elementR_standard
Object elementR_standard
readData
readData
runElementR
runElementR

Files in this package

elementR
elementR/inst
elementR/inst/www
elementR/inst/www/3.png
elementR/inst/www/2.png
elementR/inst/www/1.png
elementR/inst/elementR_documentation.pdf
elementR/inst/Example_Session
elementR/inst/Example_Session/standards
elementR/inst/Example_Session/standards/Stand2.ods
elementR/inst/Example_Session/standards/Stand3.xls
elementR/inst/Example_Session/standards/Stand1.csv
elementR/inst/Example_Session/Calibration_File_NIST612.csv
elementR/inst/Example_Session/samples
elementR/inst/Example_Session/samples/Sample_1
elementR/inst/Example_Session/samples/Sample_1/Sample1_Rep1.csv
elementR/inst/Example_Session/samples/Sample_1/Sample1_Rep3.csv
elementR/inst/Example_Session/samples/Sample_1/Sample1_Rep2.csv
elementR/inst/Example_Session/samples/Sample_2
elementR/inst/Example_Session/samples/Sample_2/Sample2_Rep3.csv
elementR/inst/Example_Session/samples/Sample_2/Sample2_Rep1.csv
elementR/inst/Example_Session/samples/Sample_2/Sample2_Rep2.csv
elementR/inst/Example_Session/samples/Sample_3
elementR/inst/Example_Session/samples/Sample_3/Sample3_Rep3.csv
elementR/inst/Example_Session/samples/Sample_3/Sample3_Rep2.csv
elementR/inst/Example_Session/samples/Sample_3/Sample3_Rep1.csv
elementR/inst/Results
elementR/inst/Results/standards
elementR/inst/Results/standards/Stand2.ods
elementR/inst/Results/standards/Stand2.ods/data_SuppBlank_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_Norm_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_Blank_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_SupLOD_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_OutlierFree_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_Plateau_Stand2.ods.csv
elementR/inst/Results/standards/Stand3.xls
elementR/inst/Results/standards/Stand3.xls/data_SuppBlank_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_Blank_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_OutlierFree_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_Norm_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_Plateau_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_SupLOD_Stand3.xls.csv
elementR/inst/Results/standards/Stand1.csv
elementR/inst/Results/standards/Stand1.csv/graphics
elementR/inst/Results/standards/Stand1.csv/graphics/RawData_Stand1.csv.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/RawData_All_graph1.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredDataPlateau.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredDataNormalized.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredDataBlank.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredDataBlank_removed.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredData_All2.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredDataSupp_LOD.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredData_All.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredDataOutliers_free.jpg
elementR/inst/Results/standards/Stand1.csv/graphics/Mg25/FilteredDataRaw.jpg
elementR/inst/Results/standards/Stand1.csv/data_SupLOD_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_SuppBlank_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_Plateau_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_Norm_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_Blank_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_OutlierFree_Stand1.csv.csv
elementR/inst/Results/SummaryStandard.csv
elementR/inst/Results/SummarySettings.csv
elementR/inst/Results/samples
elementR/inst/Results/samples/Sample_1
elementR/inst/Results/samples/Sample_1/graphics
elementR/inst/Results/samples/Sample_1/graphics/RealignData_Sample_1_Ba138.jpg
elementR/inst/Results/samples/Sample_1/graphics/RealignData_1.jpg
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Plateau_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Norm_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_ConcCorr_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SupLOD_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SuppBlank_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Conc_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Blank_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Conc_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Norm_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Blank_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Plateau_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SupLOD_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SuppBlank_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_ConcCorr_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_ConcCorr_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Plateau_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Conc_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Blank_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SupLOD_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SuppBlank_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Norm_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/final_Sample_1.csv
elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep2.csv.csv
elementR/inst/Results/Example_Session.RData
elementR/inst/Results/Machine_Drift_3_&_Sup1.jpg
elementR/inst/Results/regression_parameters.csv
elementR/NAMESPACE
elementR/R
elementR/R/App.R
elementR/R/classElementR_R6.R
elementR/MD5
elementR/DESCRIPTION
elementR/man
elementR/man/elementR_standard.Rd
elementR/man/elementR_rep.Rd
elementR/man/runElementR.Rd
elementR/man/elementR_data.Rd
elementR/man/readData.Rd
elementR/man/elementR_project.Rd
elementR/man/elementR_sample.Rd
elementR/man/elementR_repStandard.Rd
elementR/man/elementR_repSample.Rd
elementR/man/elementR-package.Rd