elementR: A Set of R6 Classes & a Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures
Version 1.3.1

Aims to facilitate the reduction of elemental microchemistry data from solid-phase LA-ICPMS analysis (laser ablation inductive coupled plasma mass spectrometry). The elementR package provides a reactive and user friendly interface for conducting all steps needed for an optimal data reduction while leaving maximum control for user.

Browse man pages Browse package API and functions Browse package files

AuthorCharlotte Sirot, Francois Guilhaumon
Date of publication2017-04-17 14:13:26 UTC
MaintainerCharlotte Sirot <charlott.sirot@gmail.com>
LicenseGPL (>= 2)
Version1.3.1
URL https://github.com/charlottesirot/elementR
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("elementR")

Man pages

elementR_data: Object elementR_data
elementR-package: A Shiny Application for Reducing Elemental LA-ICPMS Data from...
elementR_project: Object elementR_project
elementR_rep: Object elementR_rep
elementR_repSample: object elementR_repSample
elementR_repStandard: Object elementR_repStandard
elementR_sample: Object elementR_sample
elementR_standard: Object elementR_standard
readData: readData
runElementR: runElementR

Functions

elementR_data Man page
elementR_project Man page
elementR_rep Man page
elementR_repSample Man page
elementR_repStandard Man page
elementR_sample Man page
elementR_standard Man page
readData Man page Source code
runElementR Man page Source code

Files

inst
inst/www
inst/www/elementR.css
inst/www/3.png
inst/www/2.png
inst/www/1.png
inst/elementR_documentation.pdf
inst/Example_Session
inst/Example_Session/standards
inst/Example_Session/standards/Stand2.ods
inst/Example_Session/standards/Stand3.xls
inst/Example_Session/standards/Stand1.csv
inst/Example_Session/Calibration_File_NIST612.csv
inst/Example_Session/samples
inst/Example_Session/samples/Sample_1
inst/Example_Session/samples/Sample_1/Sample1_Rep1.csv
inst/Example_Session/samples/Sample_1/Sample1_Rep3.csv
inst/Example_Session/samples/Sample_1/Sample1_Rep2.csv
inst/Example_Session/samples/Sample_2
inst/Example_Session/samples/Sample_2/Sample2_Rep3.csv
inst/Example_Session/samples/Sample_2/Sample2_Rep1.csv
inst/Example_Session/samples/Sample_2/Sample2_Rep2.csv
inst/Example_Session/samples/Sample_3
inst/Example_Session/samples/Sample_3/Sample3_Rep3.csv
inst/Example_Session/samples/Sample_3/Sample3_Rep2.csv
inst/Example_Session/samples/Sample_3/Sample3_Rep1.csv
inst/Results
inst/Results/standards
inst/Results/standards/Stand2.ods
inst/Results/standards/Stand2.ods/data_SuppBlank_Stand2.ods.csv
inst/Results/standards/Stand2.ods/data_Norm_Stand2.ods.csv
inst/Results/standards/Stand2.ods/data_Blank_Stand2.ods.csv
inst/Results/standards/Stand2.ods/data_SupLOD_Stand2.ods.csv
inst/Results/standards/Stand2.ods/data_OutlierFree_Stand2.ods.csv
inst/Results/standards/Stand2.ods/data_Plateau_Stand2.ods.csv
inst/Results/standards/Stand3.xls
inst/Results/standards/Stand3.xls/data_SuppBlank_Stand3.xls.csv
inst/Results/standards/Stand3.xls/data_Blank_Stand3.xls.csv
inst/Results/standards/Stand3.xls/data_OutlierFree_Stand3.xls.csv
inst/Results/standards/Stand3.xls/data_Norm_Stand3.xls.csv
inst/Results/standards/Stand3.xls/data_Plateau_Stand3.xls.csv
inst/Results/standards/Stand3.xls/data_SupLOD_Stand3.xls.csv
inst/Results/standards/Stand1.csv
inst/Results/standards/Stand1.csv/data_SupLOD_Stand1.csv.csv
inst/Results/standards/Stand1.csv/data_SuppBlank_Stand1.csv.csv
inst/Results/standards/Stand1.csv/data_Plateau_Stand1.csv.csv
inst/Results/standards/Stand1.csv/data_Norm_Stand1.csv.csv
inst/Results/standards/Stand1.csv/data_Blank_Stand1.csv.csv
inst/Results/standards/Stand1.csv/data_OutlierFree_Stand1.csv.csv
inst/Results/SummaryStandard.csv
inst/Results/SummarySettings.csv
inst/Results/samples
inst/Results/samples/Sample_1
inst/Results/samples/Sample_1/Sample1_Rep1.csv
inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Plateau_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Norm_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_ConcCorr_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SupLOD_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SuppBlank_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Conc_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Blank_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Conc_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Norm_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Blank_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Plateau_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SupLOD_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SuppBlank_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_ConcCorr_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_ConcCorr_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Plateau_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Conc_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Blank_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SupLOD_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SuppBlank_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Norm_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_1/finalCorr_Sample_1.csv
inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep1.csv.csv
inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep3.csv.csv
inst/Results/samples/Sample_1/final_Sample_1.csv
inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep2.csv.csv
inst/Results/samples/Sample_2
inst/Results/samples/Sample_2/Sample2_Rep3.csv
inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Norm_Sample2_Rep3.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Plateau_Sample2_Rep3.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Conc_Sample2_Rep3.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_ConcCorr_Sample2_Rep3.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Blank_Sample2_Rep3.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_SupLOD_Sample2_Rep3.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_SuppBlank_Sample2_Rep3.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Conc_Sample2_Rep1.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_SupLOD_Sample2_Rep1.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_SuppBlank_Sample2_Rep1.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Norm_Sample2_Rep1.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_ConcCorr_Sample2_Rep1.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Blank_Sample2_Rep1.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Plateau_Sample2_Rep1.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_SupLOD_Sample2_Rep2.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_SuppBlank_Sample2_Rep2.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_ConcCorr_Sample2_Rep2.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Plateau_Sample2_Rep2.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Norm_Sample2_Rep2.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Blank_Sample2_Rep2.csv.csv
inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Conc_Sample2_Rep2.csv.csv
inst/Results/samples/Sample_2/final_Sample_2.csv
inst/Results/Example_Session.RData
inst/Results/regression_parameters.csv
tests
tests/testthat.R
tests/testthat
tests/testthat/test_runElementR.R
tests/testthat/test_classR6_elementR.R
NAMESPACE
R
R/App.R
R/classElementR_R6.R
README.md
MD5
DESCRIPTION
man
man/elementR_standard.Rd
man/elementR_rep.Rd
man/runElementR.Rd
man/elementR_data.Rd
man/readData.Rd
man/elementR_project.Rd
man/elementR_sample.Rd
man/elementR_repStandard.Rd
man/elementR_repSample.Rd
man/elementR-package.Rd
elementR documentation built on May 20, 2017, 5:32 a.m.