elementR: A Set of R6 Classes & a Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures

Aims to facilitate the reduction of elemental microchemistry data from solid-phase LA-ICPMS analysis (laser ablation inductive coupled plasma mass spectrometry). The elementR package provides a reactive and user friendly interface for conducting all steps needed for an optimal data reduction while leaving maximum control for user.

AuthorCharlotte Sirot, Francois Guilhaumon
Date of publication2017-03-06 15:45:05
MaintainerCharlotte Sirot <charlott.sirot@gmail.com>
LicenseGPL (>= 2)
Version1.3.0
https://github.com/charlottesirot/elementR

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Files

elementR
elementR/inst
elementR/inst/www
elementR/inst/www/elementR.css
elementR/inst/www/3.png
elementR/inst/www/2.png
elementR/inst/www/1.png
elementR/inst/elementR_documentation.pdf
elementR/inst/Example_Session
elementR/inst/Example_Session/standards
elementR/inst/Example_Session/standards/Stand2.ods
elementR/inst/Example_Session/standards/Stand3.xls
elementR/inst/Example_Session/standards/Stand1.csv
elementR/inst/Example_Session/Calibration_File_NIST612.csv
elementR/inst/Example_Session/samples
elementR/inst/Example_Session/samples/Sample_1
elementR/inst/Example_Session/samples/Sample_1/Sample1_Rep1.csv
elementR/inst/Example_Session/samples/Sample_1/Sample1_Rep3.csv
elementR/inst/Example_Session/samples/Sample_1/Sample1_Rep2.csv
elementR/inst/Example_Session/samples/Sample_2
elementR/inst/Example_Session/samples/Sample_2/Sample2_Rep3.csv
elementR/inst/Example_Session/samples/Sample_2/Sample2_Rep1.csv
elementR/inst/Example_Session/samples/Sample_2/Sample2_Rep2.csv
elementR/inst/Example_Session/samples/Sample_3
elementR/inst/Example_Session/samples/Sample_3/Sample3_Rep3.csv
elementR/inst/Example_Session/samples/Sample_3/Sample3_Rep2.csv
elementR/inst/Example_Session/samples/Sample_3/Sample3_Rep1.csv
elementR/inst/Results
elementR/inst/Results/standards
elementR/inst/Results/standards/Stand2.ods
elementR/inst/Results/standards/Stand2.ods/data_SuppBlank_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_Norm_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_Blank_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_SupLOD_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_OutlierFree_Stand2.ods.csv
elementR/inst/Results/standards/Stand2.ods/data_Plateau_Stand2.ods.csv
elementR/inst/Results/standards/Stand3.xls
elementR/inst/Results/standards/Stand3.xls/data_SuppBlank_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_Blank_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_OutlierFree_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_Norm_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_Plateau_Stand3.xls.csv
elementR/inst/Results/standards/Stand3.xls/data_SupLOD_Stand3.xls.csv
elementR/inst/Results/standards/Stand1.csv
elementR/inst/Results/standards/Stand1.csv/data_SupLOD_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_SuppBlank_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_Plateau_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_Norm_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_Blank_Stand1.csv.csv
elementR/inst/Results/standards/Stand1.csv/data_OutlierFree_Stand1.csv.csv
elementR/inst/Results/SummaryStandard.csv
elementR/inst/Results/SummarySettings.csv
elementR/inst/Results/samples
elementR/inst/Results/samples/Sample_1
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Plateau_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Norm_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_ConcCorr_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SupLOD_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SuppBlank_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Conc_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Blank_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Conc_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Norm_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Blank_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Plateau_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SupLOD_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SuppBlank_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_ConcCorr_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_ConcCorr_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Plateau_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Conc_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Blank_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SupLOD_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SuppBlank_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Norm_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_1/finalCorr_Sample_1.csv
elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep1.csv.csv
elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep3.csv.csv
elementR/inst/Results/samples/Sample_1/final_Sample_1.csv
elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Norm_Sample2_Rep3.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Plateau_Sample2_Rep3.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Conc_Sample2_Rep3.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_ConcCorr_Sample2_Rep3.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_Blank_Sample2_Rep3.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_SupLOD_Sample2_Rep3.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep3.csv/data_SuppBlank_Sample2_Rep3.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Conc_Sample2_Rep1.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_SupLOD_Sample2_Rep1.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_SuppBlank_Sample2_Rep1.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Norm_Sample2_Rep1.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_ConcCorr_Sample2_Rep1.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Blank_Sample2_Rep1.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep1.csv/data_Plateau_Sample2_Rep1.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_SupLOD_Sample2_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_SuppBlank_Sample2_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_ConcCorr_Sample2_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Plateau_Sample2_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Norm_Sample2_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Blank_Sample2_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2/Sample2_Rep2.csv/data_Conc_Sample2_Rep2.csv.csv
elementR/inst/Results/samples/Sample_2/final_Sample_2.csv
elementR/inst/Results/Example_Session.RData
elementR/inst/Results/regression_parameters.csv
elementR/tests
elementR/tests/testthat.R
elementR/tests/testthat
elementR/tests/testthat/test_runElementR.R
elementR/tests/testthat/test_classR6_elementR.R
elementR/NAMESPACE
elementR/R
elementR/R/App.R elementR/R/classElementR_R6.R
elementR/README.md
elementR/MD5
elementR/DESCRIPTION
elementR/man
elementR/man/elementR_standard.Rd elementR/man/elementR_rep.Rd elementR/man/runElementR.Rd elementR/man/elementR_data.Rd elementR/man/readData.Rd elementR/man/elementR_project.Rd elementR/man/elementR_sample.Rd elementR/man/elementR_repStandard.Rd elementR/man/elementR_repSample.Rd elementR/man/elementR-package.Rd

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