Man pages for enmSdmX
Species Distribution Modeling and Ecological Niche Modeling
| bioticVelocity | Velocity of shifts in densities across a series of rasters |
| canada | Vector outline of Canada |
| compareResponse | Compare two response curves along one or more predictors |
| coordImprecision | Calculate the precision of a geographic coordinate |
| countPoints | Number of points in a "spatial points" object |
| crss | Coordinate reference systems (CRSs) and nicknames |
| customAlbers | Custom coordinate reference system WKT2 string |
| decimalToDms | Convert geographic coordinates in decimal format to... |
| dmsToDecimal | Convert geographic coordinates in degrees-minutes-second to... |
| dot-calcWeights | Calculate weights for a model |
| dot-cardinalDistance | Movement of occupied cells in a given direction of a fixed... |
| dot-euclid | Euclidean distance between a pair of points |
| dot-interpCoordFromQuantile | Latitude of quantile(s) of the geographic abundance... |
| dot-scalePredictors | Scales predictors |
| elimCellDuplicates | Thin spatial points so that there is but one per raster cell |
| enmSdmX | enmSdmX: Species distribution modeling and ecological niche... |
| evalAUC | Weighted AUC |
| evalContBoyce | Continuous Boyce Index (CBI) with weighting |
| evalMultiAUC | Calculate multivariate weighted AUC |
| evalThreshold | Weighted thresholds for predictions |
| evalThresholdStats | Thresholded evaluation statistics |
| evalTjursR2 | Weighted Tjur's R2 |
| evalTSS | Weighted True Skill Statistic (TSS) |
| extentToVect | Convert extent to a spatial polygon |
| geoFold | Assign geographically-distinct k-folds |
| geoFoldContrast | Assign geographically-distinct k-folds to background/absence... |
| geoThin | Thin geographic points deterministically or randomly |
| getCRS | WKT string for a named coordinate reference system or a... |
| getValueByCell | Get or assign values to cells in a raster |
| globalx | "Friendly" wrapper for terra::global() for calculating raster... |
| interpolateRasts | Interpolate values from a series of rasters |
| lemurs | Lemur occurrences from GBIF |
| longLatRasts | Generate rasters with cell values equal to cell longitude or... |
| mad0 | Madagascar spatial object |
| mad1 | Madagascar spatial object |
| madClim | Present-day climate rasters for Madagascar |
| madClim2030 | Future climate rasters for Madagascar |
| madClim2050 | Future climate rasters for Madagascar |
| madClim2070 | Future climate rasters for Madagascar |
| madClim2090 | Future climate rasters for Madagascar |
| modelSize | Number of response data in a model object |
| nearestEnvPoints | Extract "most conservative" environments from points and/or... |
| nearestGeogPoints | Minimum convex polygon from a set of spatial polygons and/or... |
| nicheOverlapMetrics | Metrics of niche overlap |
| plotExtent | Create spatial polygon same size as a plot |
| predictEnmSdm | Generic predict function for SDMs/ENMs |
| predictMaxEnt | Predict a MaxEnt model object (with optional feature-level... |
| predictMaxNet | Predictions from a MaxNet model |
| responseCurves | Plot response curves for one or more models |
| sampleRast | Sample random points from a raster with/out replacement |
| spatVectorToSpatial | Convert SpatVector to Spatial* |
| squareCellRast | Create a raster with square cells |
| summaryByCrossValid | Summarize distribution/niche model cross-validation object |
| trainBRT | Calibrate a boosted regression tree (generalized boosting... |
| trainByCrossValid | Calibrate a distribution/niche model using cross-validation |
| trainESM | Calibrate an ensemble of small models |
| trainGAM | Calibrate a generalized additive model (GAM) |
| trainGLM | Calibrate a generalized linear model (GLM) |
| trainMaxEnt | Calibrate a MaxEnt model using AICc |
| trainMaxNet | Calibrate a MaxNet model using AICc |
| trainNS | Calibrate a natural splines model |
| trainRF | Calibrate a random forest model |
| troubleshooting_parallel_operations | Troubleshooting parallel operations |
| weightByDist | Proximity-based weighting for occurrences to correct for... |
