ensemblQueryLDwithSNPpair: Function to query Ensembl LD data with a pair of rsIDs. This...

In ensemblQueryR: Simple, Fast and Efficient Querying of the 'Ensembl' API

Function to query Ensembl LD data with a pair of rsIDs. This function will return r-squared and D' values for the rsID pair.

Description

Function to query Ensembl LD data with a pair of rsIDs. This function will return r-squared and D' values for the rsID pair.

Usage

ensemblQueryLDwithSNPpair(rsid1, rsid2, pop = "1000GENOMES:phase_3:EUR")

Arguments

rsid1	String. Variant ID 1.
rsid2	String. Variant ID 2.
pop	String. Population for which to compute LD. Use 'ensemblQueryGetPops()' to retrieve a list of all populations with LD data. Default is 1000GENOMES:phase_3:EUR.

Value

A dataframe.

Examples

ensemblQueryLDwithSNPpair(
  rsid1="rs6792369",
  rsid2="rs1042779",
  pop="1000GENOMES:phase_3:EUR"
)

ensemblQueryR documentation built on May 31, 2023, 6:38 p.m.