ensemblQueryLDwithSNPpairDataframe: 'ensemblQueryLDwithSNPpairDataframe' applies...
In ensemblQueryR: Simple, Fast and Efficient Querying of the 'Ensembl' API

View source: R/ensemblQueryLDpairEndpoint.R

ensemblQueryLDwithSNPpairDataframe

R Documentation

'ensemblQueryLDwithSNPpairDataframe' applies 'ensemblQueryLDwithSNPpair' to a data.frame of rsID pairs

Description

'ensemblQueryLDwithSNPpairDataframe' applies 'ensemblQueryLDwithSNPpair' to a data.frame of rsID pairs

Usage

ensemblQueryLDwithSNPpairDataframe(
  in.table,
  pop = "1000GENOMES:phase_3:EUR",
  cores = 1
)

Arguments

`in.table`	data.frame containing SNP pairs. Columns must include 'rsid1' for the first member of the pair and 'rsid2' for the second member of the pair.
`pop`	String. Population for which to compute LD. Use 'ensemblQueryGetPops()' to retrieve a list of all populations with LD data. Default is 1000GENOMES:phase_3:EUR.
`cores`	Integer. A value between 1 and 10 is accepted, as this prevents the server returning overload-related errors.

Value

A dataframe.

Examples

ensemblQueryLDwithSNPpairDataframe(
 in.table=data.frame(rsid1=rep("rs6792369", 10),
                     rsid2=rep("rs1042779", 10)),
                     pop="1000GENOMES:phase_3:EUR"
)

ensemblQueryR documentation built on May 31, 2023, 6:38 p.m.