enviPick: Peak Picking for High Resolution Mass Spectrometry Data
Version 1.5

Sequential partitioning, clustering and peak detection of centroided LC-MS mass spectrometry data (.mzXML). Interactive result and raw data plot.

AuthorMartin Loos
Date of publication2016-06-06 17:56:38
MaintainerMartin Loos <Martin.Loos@eawag.ch>
LicenseGPL (>= 2)
Version1.5
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("enviPick")

Getting started

Package overview

Popular man pages

mzagglom: Agglomerative partitioning of raw LC-HRMS measurements
mzpart: Divisive partitioning of raw LC-HRMS measurements
mzpick: EIC peak picking
plotMSlist: Interactive raw data and result viewer
readMSdata: Read LC-HRMS measurement .mzXML data
webpick: enviPick web browser UI
writePeaklist: Export a .csv peak table from an MSlist object
See all...

All man pages Function index File listing

Man pages

enviPickbatch: Batch peak picking for several .mzXML input files
enviPick-package: Peak picking for high resolution liquid chromatography - mass...
enviPickwrap: Peak detection for LC-HRMS .mzML and .mzXML data
mzagglom: Agglomerative partitioning of raw LC-HRMS measurements
mzclust: EIC-clustering of LC-HRMS data.
mzpart: Divisive partitioning of raw LC-HRMS measurements
mzpick: EIC peak picking
plotMSlist: Interactive raw data and result viewer
readMSdata: Read LC-HRMS measurement .mzXML data
webpick: enviPick web browser UI
writePeaklist: Export a .csv peak table from an MSlist object

Functions

PWbatch Source code
PWfile Source code
enviPick Man page
enviPick-package Man page
enviPickbatch Man page Source code
enviPickwrap Man page Source code
mzagglom Man page Source code
mzclust Man page Source code
mzpart Man page Source code
mzpick Man page Source code
onAttach Source code
plotMSlist Man page Source code
readMSdata Man page Source code
webpick Man page Source code
writePeaklist Man page Source code

Files

inst
inst/webpick
inst/webpick/server.r
inst/webpick/ui.r
inst/doc
inst/doc/enviPick.pdf
src
src/auxil.h
src/kernel.cpp
NAMESPACE
NEWS
R
R/PWfile.R
R/mzclust.R
R/plotMSlist.R
R/enviPickwrap.R
R/webpick.R
R/writePeaklist.R
R/enviPick.R
R/PWbatch.R
R/mzpart.R
R/mzpick.R
R/readMSdata.R
R/mzagglom.r
R/enviPickbatch.R
MD5
DESCRIPTION
man
man/enviPickbatch.Rd
man/enviPickwrap.Rd
man/enviPick-package.Rd
man/mzpart.Rd
man/writePeaklist.Rd
man/readMSdata.Rd
man/plotMSlist.Rd
man/mzagglom.Rd
man/mzpick.Rd
man/mzclust.Rd
man/webpick.Rd
enviPick documentation built on May 19, 2017, 8:03 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

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