enviPick: Peak Picking for High Resolution Mass Spectrometry Data

Sequential partitioning, clustering and peak detection of centroided LC-MS mass spectrometry data (.mzXML). Interactive result and raw data plot.

Author
Martin Loos
Date of publication
2016-06-06 17:56:38
Maintainer
Martin Loos <Martin.Loos@eawag.ch>
License
GPL (>= 2)
Version
1.5

View on CRAN

Man pages

enviPickbatch
Batch peak picking for several .mzXML input files
enviPick-package
Peak picking for high resolution liquid chromatography - mass...
enviPickwrap
Peak detection for LC-HRMS .mzML and .mzXML data
mzagglom
Agglomerative partitioning of raw LC-HRMS measurements
mzclust
EIC-clustering of LC-HRMS data.
mzpart
Divisive partitioning of raw LC-HRMS measurements
mzpick
EIC peak picking
plotMSlist
Interactive raw data and result viewer
readMSdata
Read LC-HRMS measurement .mzXML data
webpick
enviPick web browser UI
writePeaklist
Export a .csv peak table from an MSlist object

Files in this package

enviPick
enviPick/inst
enviPick/inst/webpick
enviPick/inst/webpick/server.r
enviPick/inst/webpick/ui.r
enviPick/inst/doc
enviPick/inst/doc/enviPick.pdf
enviPick/src
enviPick/src/auxil.h
enviPick/src/kernel.cpp
enviPick/NAMESPACE
enviPick/NEWS
enviPick/R
enviPick/R/PWfile.R
enviPick/R/mzclust.R
enviPick/R/plotMSlist.R
enviPick/R/enviPickwrap.R
enviPick/R/webpick.R
enviPick/R/writePeaklist.R
enviPick/R/enviPick.R
enviPick/R/PWbatch.R
enviPick/R/mzpart.R
enviPick/R/mzpick.R
enviPick/R/readMSdata.R
enviPick/R/mzagglom.r
enviPick/R/enviPickbatch.R
enviPick/MD5
enviPick/DESCRIPTION
enviPick/man
enviPick/man/enviPickbatch.Rd
enviPick/man/enviPickwrap.Rd
enviPick/man/enviPick-package.Rd
enviPick/man/mzpart.Rd
enviPick/man/writePeaklist.Rd
enviPick/man/readMSdata.Rd
enviPick/man/plotMSlist.Rd
enviPick/man/mzagglom.Rd
enviPick/man/mzpick.Rd
enviPick/man/mzclust.Rd
enviPick/man/webpick.Rd