plotMSlist: Interactive raw data and result viewer

In enviPick: Peak Picking for High Resolution Mass Spectrometry Data

Description

View your centroided LC-HRMS data and partitioning / clustering / peak-picking results. Monitor what peak-picking produces and if it fails; get a grip on optimal parameter settings from comparison with underlying raw data.

Usage

plotMSlist(MSlist, RTlimit = FALSE, mzlimit = FALSE, shiny = FALSE, ppmbar = 8)

Arguments

MSlist	An MSlist returned by readMSdata, mzpart, mzclust or mzpick
RTlimit	Initialize plot: two-element vector of lower and upper RT plot limits. Set to FALSE to view full data.
mzlimit	Initialize plot: two-element vector of lower and upper m/z limits. Set to FALSE to view full data.
shiny	For debugging. Ignore.
ppmbar	Size of m/z bar (in ppm) shown at large zoom

Details

For more help, use the help button in the interactive plot. Based on low-level R plot functionality!

Note

MSlist may contain a lot of data; rendering of measurements for plotting may thus decrease in speed when zooming out or using the full-view mode.

Author(s)

Martin Loos

See Also

readMSdata mzagglom mzclust mzpick

enviPick documentation built on May 1, 2019, 8:05 p.m.