Files in epi2me2r
Process Nanopore EPI2ME Output for Use in R
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
R/amr_read_taxonomy.R
R/read_in_wimp_files.R
R/amr_raw_to_phyloseq.R
R/data.R
R/amr_raw_to_metagenomeseq.R
R/generate_wimp_taxonomy.R
R/wimp_raw_to_phyloseq.R
R/wimp_raw_to_metagenomeseq.R
R/generate_amr_taxonomy.R
R/globals.R
R/read_in_amr_files.R
inst/epi2me.download.report.jpg
inst/metadata-example.jpg
inst/CITATION
inst/doc/epi2me2r-vignette.Rmd
inst/doc/epi2me2r-vignette.R
inst/doc/epi2me2r-vignette.html
inst/extdata/example_metadata.csv
inst/extdata/example_amr_data/arma_288716.csv
inst/extdata/example_amr_data/arma_288715.csv
inst/extdata/example_wimp_data/324212_1777.csv
inst/extdata/example_wimp_data/324212_1778.csv
build/vignette.rds
tests/testthat.R
tests/testthat/test_amr.R
tests/testthat/test_wimp.R
vignettes/epi2me2r-vignette.Rmd
data/CARD_taxonomy.RData
man/wimp_raw_to_metagenomeseq.Rd
man/amr_raw_to_phyloseq.Rd
man/CARD_taxonomy.Rd
man/read_in_amr_files.Rd
man/amr_read_taxonomy.Rd
man/epi2me2r.Rd
man/generate_amr_taxonomy.Rd
man/read_in_wimp_files.Rd
man/generate_wimp_taxonomy.Rd
man/amr_raw_to_metagenomeseq.Rd
man/wimp_raw_to_phyloseq.Rd
