generate_amr_taxonomy: Generates a taxonomy file for AMR count table

In epi2me2r: Process Nanopore EPI2ME Output for Use in R

Generates a taxonomy file for AMR count table

Description

Generates a taxonomy file for AMR count table

Arguments

amr.count.table	count of AMR genes with CVTERMID in the first row and samples on columns
verbose	TRUE or FALSE: whether to keep all columns of AMR gene information or not. Default FALSE.

Value

data table of taxonomy of AMR genes in count table

Examples

## Not run: 
generate_amr_taxonomy(amr.count.table = amr.count.table, verbose = FALSE)

## End(Not run)

epi2me2r documentation built on June 3, 2022, 9:07 a.m.