Man pages for epi2me2r
Process Nanopore EPI2ME Output for Use in R
| amr_raw_to_metagenomeseq | Raw AMR files plus metadata to phyloseq object |
| amr_raw_to_phyloseq | Raw AMR files plus metadata to phyloseq object |
| amr_read_taxonomy | assign taxonomy for phylogenetic and AMR for each read |
| CARD_taxonomy | CARD 3.1.4 and 1.1.3 aro_index hand curated and combine |
| epi2me2r | epi2me2r. |
| generate_amr_taxonomy | Generates a taxonomy file for AMR count table |
| generate_wimp_taxonomy | Generates a taxonomy file for WIMP court table using... |
| read_in_amr_files | Convert raw AMR CSV files to data table |
| read_in_wimp_files | Convert raw WIMP CSV files to data table |
| wimp_raw_to_metagenomeseq | Raw WIMP files plus metadata to metagenomeseq object |
| wimp_raw_to_phyloseq | Raw WIMP files plus metadata to phyloseq object |
