| LFMCMC |
Man page
Source code
|
| LFMCMC_cpp |
Source code
|
| ModelDiffNet |
Man page
Source code
|
| ModelDiffNet_cpp |
Source code
|
| ModelMeaslesQuarantine |
Man page
Source code
|
| ModelMeaslesQuarantine_cpp |
Source code
|
| ModelSEIR |
Man page
Source code
|
| ModelSEIRCONN |
Man page
Source code
|
| ModelSEIRCONN_cpp |
Source code
|
| ModelSEIRD |
Man page
Source code
|
| ModelSEIRDCONN |
Man page
Source code
|
| ModelSEIRDCONN_cpp |
Source code
|
| ModelSEIRD_cpp |
Source code
|
| ModelSEIRMixing |
Man page
Source code
|
| ModelSEIRMixing_cpp |
Source code
|
| ModelSEIR_cpp |
Source code
|
| ModelSIR |
Man page
Source code
|
| ModelSIRCONN |
Man page
Source code
|
| ModelSIRCONN_cpp |
Source code
|
| ModelSIRD |
Man page
Source code
|
| ModelSIRDCONN |
Man page
Source code
|
| ModelSIRDCONN_cpp |
Source code
|
| ModelSIRD_cpp |
Source code
|
| ModelSIRLogit |
Man page
Source code
|
| ModelSIRLogit_cpp |
Source code
|
| ModelSIRMixing |
Man page
Source code
|
| ModelSIRMixing_cpp |
Source code
|
| ModelSIR_cpp |
Source code
|
| ModelSIS |
Man page
Source code
|
| ModelSISD |
Man page
Source code
|
| ModelSISD_cpp |
Source code
|
| ModelSIS_cpp |
Source code
|
| ModelSURV |
Man page
Source code
|
| ModelSURV_cpp |
Source code
|
| [.epiworld_agents |
Man page
|
| [.epiworld_entities |
Man page
|
| `[.epiworld_agents` |
Source code
Source code
|
| `[.epiworld_entities` |
Source code
|
| actions |
Man page
|
| add_entity |
Man page
Source code
|
| add_entity_cpp |
Source code
|
| add_globalevent |
Man page
Source code
|
| add_globalevent_cpp |
Source code
|
| add_param |
Man page
Source code
|
| add_param.epiworld_model |
Man page
Source code
|
| add_param_cpp |
Source code
|
| add_tool |
Man page
Source code
|
| add_tool.epiworld_model |
Source code
|
| add_tool_agent |
Man page
Source code
|
| add_tool_agent_cpp |
Source code
|
| add_tool_cpp |
Source code
|
| add_tool_n |
Man page
Source code
|
| add_virus |
Man page
Source code
|
| add_virus.epiworld_model |
Source code
|
| add_virus.epiworld_seir |
Source code
|
| add_virus.epiworld_seirconn |
Source code
|
| add_virus.epiworld_seird |
Source code
|
| add_virus.epiworld_seirdconn |
Source code
|
| add_virus.epiworld_sir |
Source code
|
| add_virus.epiworld_sirconn |
Source code
|
| add_virus.epiworld_sird |
Source code
|
| add_virus.epiworld_sirdconn |
Source code
|
| add_virus_agent |
Man page
Source code
|
| add_virus_agent_cpp |
Source code
|
| add_virus_cpp |
Source code
|
| add_virus_n |
Man page
Source code
|
| agents |
Man page
|
| agents_from_edgelist |
Man page
Source code
|
| agents_from_edgelist.epiworld_model |
Source code
|
| agents_from_edgelist_cpp |
Source code
|
| agents_smallworld |
Man page
Source code
|
| agents_smallworld.epiworld_model |
Source code
|
| agents_smallworld_cpp |
Source code
|
| as.array.epiworld_hist_transition |
Man page
Source code
|
| change_state |
Man page
Source code
|
| change_state_cpp |
Source code
|
| clone_model |
Man page
Source code
|
| clone_model_cpp |
Source code
|
| distribute_entity_randomly |
Man page
Source code
|
| distribute_entity_randomly_cpp |
Source code
|
| distribute_entity_to_set |
Man page
Source code
|
| distribute_entity_to_set_cpp |
Source code
|
| distribute_tool_randomly |
Man page
Source code
|
| distribute_tool_randomly_cpp |
Source code
|
| distribute_tool_to_set |
Man page
Source code
|
| distribute_tool_to_set_cpp |
Source code
|
| distribute_virus_randomly |
Man page
Source code
|
| distribute_virus_randomly_cpp |
Source code
|
| distribute_virus_set |
Man page
Source code
|
| distribute_virus_to_set |
Man page
Source code
|
| distribute_virus_to_set_cpp |
Source code
|
| draw_from_data_cpp |
Source code
|
| draw_from_file_cpp |
Source code
|
| draw_from_files_cpp |
Source code
|
| draw_mermaid |
Man page
Source code
|
| draw_mermaid_cpp |
Source code
|
| draw_mermaid_from_data |
Man page
Source code
|
| draw_mermaid_from_file |
Man page
Source code
|
| draw_mermaid_from_files |
Man page
Source code
|
| draw_mermaid_from_matrix |
Man page
Source code
|
| entities |
Man page
|
| entity |
Man page
Source code
|
| entity_add_agent |
Man page
Source code
|
| entity_add_agent_cpp |
Source code
|
| entity_cpp |
Source code
|
| entity_get_agents |
Man page
Source code
|
| entity_get_agents_cpp |
Source code
|
| epiworld-data |
Man page
|
| epiworld-methods |
Man page
|
| epiworld-model-diagram |
Man page
|
| epiworldR |
Man page
|
| epiworldR-deprecated |
Man page
|
| epiworldR-package |
Man page
|
| epiworld_agent |
Man page
|
| epiworld_agents |
Man page
|
| epiworld_diffnet |
Man page
|
| epiworld_globalevent |
Man page
|
| epiworld_globalevent_set_param |
Man page
|
| epiworld_globalevent_tool |
Man page
|
| epiworld_globalevent_tool_logit |
Man page
|
| epiworld_hist_tool |
Man page
|
| epiworld_hist_total |
Man page
|
| epiworld_hist_variant |
Man page
|
| epiworld_hist_virus |
Man page
|
| epiworld_lfmcmc |
Man page
|
| epiworld_measlesquarantine |
Man page
|
| epiworld_model |
Man page
|
| epiworld_repnum |
Man page
|
| epiworld_saver |
Man page
|
| epiworld_seir |
Man page
|
| epiworld_seirconn |
Man page
|
| epiworld_seird |
Man page
|
| epiworld_seirdconn |
Man page
|
| epiworld_seirmixing |
Man page
|
| epiworld_sir |
Man page
|
| epiworld_sirconn |
Man page
|
| epiworld_sird |
Man page
|
| epiworld_sirdconn |
Man page
|
| epiworld_sirmixing |
Man page
|
| epiworld_sis |
Man page
|
| epiworld_sisd |
Man page
|
| epiworld_surv |
Man page
|
| epiworld_tool |
Man page
|
| epiworld_virus |
Man page
|
| find_scale |
Source code
|
| get_agent_cpp |
Source code
|
| get_agents |
Man page
Source code
|
| get_agents.epiworld_model |
Man page
Source code
|
| get_agents_cpp |
Source code
|
| get_agents_data_ncols |
Man page
Source code
|
| get_agents_data_ncols_cpp |
Source code
|
| get_agents_states |
Man page
Source code
|
| get_agents_states_cpp |
Source code
|
| get_agents_tools |
Man page
Source code
|
| get_agents_tools_cpp |
Source code
|
| get_all_accepted_kernel_scores |
Man page
Source code
|
| get_all_accepted_kernel_scores_cpp |
Source code
|
| get_all_accepted_params |
Man page
Source code
|
| get_all_accepted_params_cpp |
Source code
|
| get_all_accepted_stats |
Man page
Source code
|
| get_all_accepted_stats_cpp |
Source code
|
| get_all_sample_acceptance |
Man page
Source code
|
| get_all_sample_acceptance_cpp |
Source code
|
| get_all_sample_drawn_prob |
Man page
Source code
|
| get_all_sample_drawn_prob_cpp |
Source code
|
| get_all_sample_kernel_scores |
Man page
Source code
|
| get_all_sample_kernel_scores_cpp |
Source code
|
| get_all_sample_params |
Man page
Source code
|
| get_all_sample_params_cpp |
Source code
|
| get_all_sample_stats |
Man page
Source code
|
| get_all_sample_stats_cpp |
Source code
|
| get_current_accepted_params |
Man page
Source code
|
| get_current_accepted_params_cpp |
Source code
|
| get_current_accepted_stats |
Man page
Source code
|
| get_current_accepted_stats_cpp |
Source code
|
| get_current_proposed_params |
Man page
Source code
|
| get_current_proposed_params_cpp |
Source code
|
| get_current_proposed_stats |
Man page
Source code
|
| get_current_proposed_stats_cpp |
Source code
|
| get_entities |
Man page
Source code
|
| get_entities_cpp |
Source code
|
| get_entity_cpp |
Source code
|
| get_entity_name |
Man page
Source code
|
| get_entity_name_cpp |
Source code
|
| get_entity_size |
Man page
Source code
|
| get_entity_size_cpp |
Source code
|
| get_generation_time |
Man page
Source code
|
| get_generation_time_cpp |
Source code
|
| get_hist_tool |
Man page
Source code
|
| get_hist_tool.epiworld_model |
Source code
|
| get_hist_tool_cpp |
Source code
|
| get_hist_total |
Man page
Source code
|
| get_hist_total.epiworld_model |
Source code
|
| get_hist_total_cpp |
Source code
|
| get_hist_transition_matrix |
Man page
Source code
|
| get_hist_transition_matrix.epiworld_model |
Source code
|
| get_hist_transition_matrix_cpp |
Source code
|
| get_hist_virus |
Man page
Source code
|
| get_hist_virus.epiworld_model |
Source code
|
| get_hist_virus_cpp |
Source code
|
| get_initial_params |
Man page
Source code
|
| get_initial_params_cpp |
Source code
|
| get_mean_params |
Man page
Source code
|
| get_mean_params_cpp |
Source code
|
| get_mean_stats |
Man page
Source code
|
| get_mean_stats_cpp |
Source code
|
| get_n_params |
Man page
Source code
|
| get_n_params_cpp |
Source code
|
| get_n_replicates |
Man page
Source code
|
| get_n_replicates.epiworld_model |
Source code
|
| get_n_replicates_cpp |
Source code
|
| get_n_samples |
Man page
Source code
|
| get_n_samples_cpp |
Source code
|
| get_n_stats |
Man page
Source code
|
| get_n_stats_cpp |
Source code
|
| get_n_tools |
Man page
Source code
|
| get_n_tools.epiworld_model |
Source code
|
| get_n_tools_cpp |
Source code
|
| get_n_viruses |
Man page
Source code
|
| get_n_viruses.epiworld_model |
Source code
|
| get_n_viruses_cpp |
Source code
|
| get_name |
Man page
Source code
|
| get_name.epiworld_model |
Source code
|
| get_name_cpp |
Source code
|
| get_name_tool |
Man page
Source code
|
| get_name_tool_cpp |
Source code
|
| get_name_virus |
Man page
Source code
|
| get_name_virus_cpp |
Source code
|
| get_ndays |
Man page
Source code
|
| get_ndays.epiworld_model |
Source code
|
| get_ndays_cpp |
Source code
|
| get_network |
Man page
Source code
|
| get_network_cpp |
Source code
|
| get_observed_stats |
Man page
Source code
|
| get_observed_stats_cpp |
Source code
|
| get_param |
Man page
Source code
|
| get_param.epiworld_model |
Source code
|
| get_param_cpp |
Source code
|
| get_reproductive_number |
Man page
Source code
|
| get_reproductive_number.epiworld_model |
Source code
|
| get_reproductive_number_cpp |
Source code
|
| get_state |
Man page
Source code
|
| get_state_agent_cpp |
Source code
|
| get_states |
Man page
Source code
|
| get_states.epiworld_model |
Source code
|
| get_states_cpp |
Source code
|
| get_today_total |
Man page
Source code
|
| get_today_total.epiworld_model |
Source code
|
| get_today_total_cpp |
Source code
|
| get_tool |
Man page
Source code
|
| get_tool_model_cpp |
Source code
|
| get_transition_probability |
Man page
Source code
|
| get_transition_probability.epiworld_model |
Source code
|
| get_transition_probability_cpp |
Source code
|
| get_transmissions |
Man page
Source code
|
| get_transmissions.epiworld_diffnet |
Source code
|
| get_transmissions.epiworld_model |
Source code
|
| get_transmissions_cpp |
Source code
|
| get_virus |
Man page
Source code
|
| get_virus_model_cpp |
Source code
|
| global-actions |
Man page
|
| global-events |
Man page
|
| globalaction_fun |
Man page
Source code
|
| globalaction_set_params |
Man page
Source code
|
| globalaction_tool |
Man page
Source code
|
| globalaction_tool_logit |
Man page
Source code
|
| globalevent_fun |
Man page
Source code
|
| globalevent_fun_cpp |
Source code
|
| globalevent_set_param_cpp |
Source code
|
| globalevent_set_params |
Man page
Source code
|
| globalevent_tool |
Man page
Source code
|
| globalevent_tool_cpp |
Source code
|
| globalevent_tool_logit |
Man page
Source code
|
| globalevent_tool_logit_cpp |
Source code
|
| has_tool |
Man page
Source code
|
| has_tool_cpp |
Source code
|
| has_virus |
Man page
Source code
|
| has_virus_cpp |
Source code
|
| initial_states |
Man page
Source code
|
| initial_states_cpp |
Source code
|
| load_agents_entities_ties |
Man page
Source code
|
| load_agents_entities_ties_cpp |
Source code
|
| make_saver |
Man page
Source code
|
| make_saver_cpp |
Source code
|
| network |
Man page
|
| plot.epiworld_generation_time |
Man page
Source code
|
| plot.epiworld_hist |
Source code
|
| plot.epiworld_hist_transition |
Man page
Source code
|
| plot.epiworld_model |
Source code
|
| plot.epiworld_multiple_save |
Source code
|
| plot.epiworld_multiple_save_i |
Source code
|
| plot.epiworld_multiple_save_reproductive_number |
Source code
|
| plot.epiworld_repnum |
Man page
Source code
|
| plot_epi |
Source code
|
| plot_epi.epiworld_hist |
Source code
|
| plot_epi.epiworld_hist_virus |
Source code
|
| plot_epi.epiworld_model |
Source code
|
| plot_generation_time |
Man page
Source code
|
| plot_incidence |
Man page
Source code
|
| plot_reproductive_number |
Man page
Source code
|
| print.epiworld_agent |
Man page
Source code
|
| print.epiworld_agents |
Man page
Source code
|
| print.epiworld_agents_tools |
Man page
Source code
|
| print.epiworld_entities |
Source code
|
| print.epiworld_entity |
Source code
|
| print.epiworld_globalevent |
Source code
|
| print.epiworld_lfmcmc |
Man page
Source code
|
| print.epiworld_model |
Source code
|
| print.epiworld_saver |
Source code
|
| print.epiworld_tool |
Source code
|
| print.epiworld_tool_fun |
Source code
|
| print.epiworld_virus |
Source code
|
| print.epiworld_virus_fun |
Source code
|
| print_agent_cpp |
Source code
|
| print_agent_tools_cpp |
Source code
|
| print_cpp |
Source code
|
| print_entity_cpp |
Source code
|
| print_global_action_cpp |
Source code
|
| print_lfmcmc_cpp |
Source code
|
| print_tool_cpp |
Source code
|
| print_virus_cpp |
Source code
|
| queuing_off |
Man page
Source code
|
| queuing_off.epiworld_model |
Source code
|
| queuing_off.epiworld_seirconn |
Source code
|
| queuing_off.epiworld_sirconn |
Source code
|
| queuing_off_cpp |
Source code
|
| queuing_on |
Man page
Source code
|
| queuing_on.epiworld_model |
Source code
|
| queuing_on.epiworld_seirconn |
Source code
|
| queuing_on.epiworld_sirconn |
Source code
|
| queuing_on_cpp |
Source code
|
| rm_entity |
Man page
Source code
|
| rm_entity_cpp |
Source code
|
| rm_globalevent |
Man page
Source code
|
| rm_globalevent_cpp |
Source code
|
| rm_tool |
Man page
Source code
|
| rm_tool_cpp |
Source code
|
| rm_virus |
Man page
Source code
|
| rm_virus_cpp |
Source code
|
| run |
Man page
Source code
|
| run.epiworld_model |
Source code
|
| run_cpp |
Source code
|
| run_lfmcmc |
Man page
Source code
|
| run_lfmcmc_cpp |
Source code
|
| run_multiple |
Man page
Source code
|
| run_multiple.epiworld_model |
Source code
|
| run_multiple_cpp |
Source code
|
| run_multiple_get_results |
Man page
Source code
|
| set_agents_data |
Man page
Source code
|
| set_agents_data_cpp |
Source code
|
| set_death_reduction |
Man page
Source code
|
| set_death_reduction_cpp |
Source code
|
| set_death_reduction_fun |
Man page
Source code
|
| set_death_reduction_fun_cpp |
Source code
|
| set_death_reduction_ptr |
Man page
Source code
|
| set_death_reduction_ptr_cpp |
Source code
|
| set_distribution_entity |
Man page
Source code
|
| set_distribution_entity_cpp |
Source code
|
| set_distribution_tool |
Man page
Source code
|
| set_distribution_tool_cpp |
Source code
|
| set_distribution_virus |
Man page
Source code
|
| set_distribution_virus_cpp |
Source code
|
| set_incubation |
Man page
Source code
|
| set_incubation_cpp |
Source code
|
| set_incubation_fun |
Man page
Source code
|
| set_incubation_fun_cpp |
Source code
|
| set_incubation_ptr |
Man page
Source code
|
| set_incubation_ptr_cpp |
Source code
|
| set_kernel_fun |
Man page
Source code
|
| set_kernel_fun_cpp |
Source code
|
| set_name |
Man page
Source code
|
| set_name.epiworld_model |
Source code
|
| set_name_cpp |
Source code
|
| set_name_tool |
Man page
Source code
|
| set_name_tool_cpp |
Source code
|
| set_name_virus |
Man page
Source code
|
| set_name_virus_cpp |
Source code
|
| set_observed_data |
Man page
Source code
|
| set_observed_data_cpp |
Source code
|
| set_param |
Man page
Source code
|
| set_param.epiworld_model |
Source code
|
| set_param_cpp |
Source code
|
| set_params_names |
Man page
Source code
|
| set_params_names_cpp |
Source code
|
| set_prob_death |
Man page
Source code
|
| set_prob_death_cpp |
Source code
|
| set_prob_death_fun |
Man page
Source code
|
| set_prob_death_fun_cpp |
Source code
|
| set_prob_death_ptr |
Man page
Source code
|
| set_prob_death_ptr_cpp |
Source code
|
| set_prob_infecting |
Man page
Source code
|
| set_prob_infecting_cpp |
Source code
|
| set_prob_infecting_fun |
Man page
Source code
|
| set_prob_infecting_fun_cpp |
Source code
|
| set_prob_infecting_ptr |
Man page
Source code
|
| set_prob_infecting_ptr_cpp |
Source code
|
| set_prob_recovery |
Man page
Source code
|
| set_prob_recovery_cpp |
Source code
|
| set_prob_recovery_fun |
Man page
Source code
|
| set_prob_recovery_fun_cpp |
Source code
|
| set_prob_recovery_ptr |
Man page
Source code
|
| set_prob_recovery_ptr_cpp |
Source code
|
| set_proposal_fun |
Man page
Source code
|
| set_proposal_fun_cpp |
Source code
|
| set_recovery_enhancer |
Man page
Source code
|
| set_recovery_enhancer_cpp |
Source code
|
| set_recovery_enhancer_fun |
Man page
Source code
|
| set_recovery_enhancer_fun_cpp |
Source code
|
| set_recovery_enhancer_ptr |
Man page
Source code
|
| set_recovery_enhancer_ptr_cpp |
Source code
|
| set_simulation_fun |
Man page
Source code
|
| set_simulation_fun_cpp |
Source code
|
| set_stats_names |
Man page
Source code
|
| set_stats_names_cpp |
Source code
|
| set_summary_fun |
Man page
Source code
|
| set_summary_fun_cpp |
Source code
|
| set_susceptibility_reduction |
Man page
Source code
|
| set_susceptibility_reduction_cpp |
Source code
|
| set_susceptibility_reduction_fun |
Man page
Source code
|
| set_susceptibility_reduction_fun_cpp |
Source code
|
| set_susceptibility_reduction_ptr |
Man page
Source code
|
| set_susceptibility_reduction_ptr_cpp |
Source code
|
| set_transmission_reduction |
Man page
Source code
|
| set_transmission_reduction_cpp |
Source code
|
| set_transmission_reduction_fun |
Man page
Source code
|
| set_transmission_reduction_fun_cpp |
Source code
|
| set_transmission_reduction_ptr |
Man page
Source code
|
| set_transmission_reduction_ptr_cpp |
Source code
|
| size |
Man page
Source code
|
| size.epiworld_model |
Source code
|
| size_cpp |
Source code
|
| stopifany_na |
Source code
|
| stopifnot_agent |
Source code
|
| stopifnot_bool |
Source code
|
| stopifnot_double |
Source code
|
| stopifnot_entity |
Source code
|
| stopifnot_entity_distfun |
Source code
|
| stopifnot_int |
Source code
|
| stopifnot_lfmcmc |
Source code
|
| stopifnot_model |
Source code
|
| stopifnot_numvector |
Source code
|
| stopifnot_string |
Source code
|
| stopifnot_stringvector |
Source code
|
| stopifnot_tfun |
Source code
|
| stopifnot_tool |
Source code
|
| stopifnot_tool_distfun |
Source code
|
| stopifnot_vfun |
Source code
|
| stopifnot_virus |
Source code
|
| stopifnot_virus_distfun |
Source code
|
| summary.epiworld_model |
Man page
Source code
|
| today |
Man page
Source code
|
| today.epiworld_model |
Source code
|
| today_cpp |
Source code
|
| tool |
Man page
Source code
|
| tool_cpp |
Source code
|
| tool_fun_logit |
Man page
Source code
|
| tool_fun_logit_cpp |
Source code
|
| use_kernel_fun_gaussian |
Man page
Source code
|
| use_kernel_fun_gaussian_cpp |
Source code
|
| use_proposal_norm_reflective |
Man page
Source code
|
| use_proposal_norm_reflective_cpp |
Source code
|
| verbose_off |
Man page
Source code
|
| verbose_off.epiworld_lfmcmc |
Man page
Source code
|
| verbose_off.epiworld_model |
Source code
|
| verbose_off_cpp |
Source code
|
| verbose_off_lfmcmc_cpp |
Source code
|
| verbose_on |
Man page
Source code
|
| verbose_on.epiworld_lfmcmc |
Source code
|
| verbose_on.epiworld_model |
Source code
|
| verbose_on_cpp |
Source code
|
| verbose_on_lfmcmc_cpp |
Source code
|
| virus |
Man page
Source code
|
| virus_cpp |
Source code
|
| virus_fun_logit |
Man page
Source code
|
| virus_fun_logit_cpp |
Source code
|
| virus_set_state |
Man page
Source code
|
| virus_set_state_cpp |
Source code
|
