Files in epiworldR

Fast Agent-Based Epi Models

configure

MD5

NEWS.md README.md

NAMESPACE

configure.ac

DESCRIPTION

LICENSE

cleanup

R/epiworldR-package.R R/ModelSEIRMixingQuarantine.R R/model-methods.R R/ModelSEIR.R R/make_saver.R R/events.R R/ModelSEIRDCONN.R R/tool.R R/agents.R R/ModelSIR.R R/entity_tools.R R/ModelSIRLogit.R R/ModelSIRCONN.R R/ModelSIRDCONN.R R/data.R R/plot_epi.R R/ModelSIRMixing.R R/ModelSIS.R R/ModelSEIRD.R R/agents-methods.R R/ModelSURV.R R/arg-checks.R R/functions-renamed.R R/cpp11.R R/ModelDiffNet.R R/citer_environment.R R/ModelDiagram.R R/LFMCMC.R R/ModelSIRD.R R/entity.R R/ModelSEIRCONN.R R/ModelSISD.R R/virus.R R/ModelSEIRMixing.R

src/Makevars.win

src/epimodels.cpp

src/tool.cpp

src/db.cpp

src/agents.cpp

src/lfmcmc.cpp

src/model-diagram.cpp

src/model.cpp

src/virus.cpp

src/entities.cpp

src/events.cpp

src/Makevars.in

src/cpp11.cpp

src/epiworld-common.h

inst/CITATION

inst/include/epiworld/epiworld.hpp

inst/include/epiworld/userdata-bones.hpp

inst/include/epiworld/tool-bones.hpp

inst/include/epiworld/model-meat-print.hpp

inst/include/epiworld/virus-bones.hpp

inst/include/epiworld/entities-bones.hpp

inst/include/epiworld/config.hpp

inst/include/epiworld/model-meat.hpp

inst/include/epiworld/agent-meat-virus-sampling.hpp

inst/include/epiworld/agentssample-bones.hpp

inst/include/epiworld/modeldiagram-meat.hpp

inst/include/epiworld/randgraph.hpp

inst/include/epiworld/agent-meat.hpp

inst/include/epiworld/progress.hpp

inst/include/epiworld/adjlist-meat.hpp

inst/include/epiworld/hospitalizationstracker-meat.hpp

inst/include/epiworld/entity-bones.hpp

inst/include/epiworld/globalevent-bones.hpp

inst/include/epiworld/entity-distribute-meat.hpp

inst/include/epiworld/modeldiagram-bones.hpp

inst/include/epiworld/agent-meat-state.hpp

inst/include/epiworld/contacttracing-bones.hpp

inst/include/epiworld/entity-meat.hpp

inst/include/epiworld/random_graph.hpp

inst/include/epiworld/database-meat.hpp

inst/include/epiworld/model-bones.hpp

inst/include/epiworld/viruses-bones.hpp

inst/include/epiworld/globalevent-meat.hpp

inst/include/epiworld/database-bones.hpp

inst/include/epiworld/seq_processing.hpp

inst/include/epiworld/tools-bones.hpp

inst/include/epiworld/queue-bones.hpp

inst/include/epiworld/agent-events-meat.hpp

inst/include/epiworld/hospitalizationstracker-bones.hpp

inst/include/epiworld/tool-distribute-meat.hpp

inst/include/epiworld/virus-distribute-meat.hpp

inst/include/epiworld/agent-bones.hpp

inst/include/epiworld/misc.hpp

inst/include/epiworld/userdata-meat.hpp

inst/include/epiworld/adjlist-bones.hpp

inst/include/epiworld/epiworld-macros.hpp

inst/include/epiworld/virus-meat.hpp

inst/include/epiworld/tool-meat.hpp

inst/include/epiworld/models/sir.hpp

inst/include/epiworld/models/sirdconnected.hpp

inst/include/epiworld/models/surveillance.hpp

inst/include/epiworld/models/seirmixing.hpp

inst/include/epiworld/models/globalevents.hpp

inst/include/epiworld/models/measlesmixing.hpp

inst/include/epiworld/models/sirlogit.hpp

inst/include/epiworld/models/diffnet.hpp

inst/include/epiworld/models/seirconnected.hpp

inst/include/epiworld/models/sisd.hpp

inst/include/epiworld/models/sirconnected.hpp

inst/include/epiworld/models/seirmixingquarantine.hpp

inst/include/epiworld/models/README.md

inst/include/epiworld/models/sis.hpp

inst/include/epiworld/models/seir.hpp

inst/include/epiworld/models/measlesmixingriskquarantine.hpp

inst/include/epiworld/models/sird.hpp

inst/include/epiworld/models/measlesschool.hpp

inst/include/epiworld/models/sirmixing.hpp

inst/include/epiworld/models/init-functions.hpp

inst/include/epiworld/models/models.hpp

inst/include/epiworld/models/seird.hpp

inst/include/epiworld/models/seirdconnected.hpp

inst/include/epiworld/math/lfmcmc.hpp

inst/include/epiworld/math/distributions.hpp

inst/include/epiworld/math/lfmcmc/lfmcmc-meat.hpp

inst/include/epiworld/math/lfmcmc/lfmcmc-bones.hpp

inst/include/epiworld/math/lfmcmc/lfmcmc-meat-print.hpp

inst/doc/advanced-modeling.Rmd

inst/doc/implementation.html

inst/doc/advanced-modeling.R

inst/doc/mixing.html

inst/doc/getting-started.R inst/doc/likelihood-free-mcmc.R inst/doc/likelihood-free-mcmc.Rmd inst/doc/run-multiple.R

inst/doc/likelihood-free-mcmc.html

inst/doc/mixing.R inst/doc/implementation.Rmd

inst/doc/advanced-modeling.html

inst/doc/run-multiple.html

inst/doc/getting-started.html

inst/doc/mixing.Rmd inst/doc/run-multiple.Rmd inst/doc/getting-started.Rmd inst/tinytest/test-surv.R inst/tinytest/test-seirmixing.R inst/tinytest/test-sis.R inst/tinytest/test-sirmixing.R inst/tinytest/test-sirconn.R inst/tinytest/test-agents-and-dist-virus-tool.R inst/tinytest/test-diffnet.R inst/tinytest/test-seirconn.R inst/tinytest/test-sir.R inst/tinytest/test-seirmixingquarantine.R inst/tinytest/test-get.R inst/tinytest/test-sird.R inst/tinytest/test-seird.R inst/tinytest/test-model-methods.R inst/tinytest/test-entity_tools.R inst/tinytest/test-data.R inst/tinytest/test-seir.R inst/tinytest/test-sirlogit.R inst/tinytest/test-globalevents.R inst/tinytest/test-seirdconn.R inst/tinytest/test-lfmcmc.R inst/tinytest/test-tool.R inst/tinytest/test-multiple.R inst/tinytest/test-model-diagram.R inst/tinytest/test-outbreak-active-cases.R inst/tinytest/test-sirdconn.R inst/tinytest/test-virus.R inst/tinytest/test-sisd.R

inst/tinytest/test-model-diagram-files/single-file-transitions.txt

inst/tinytest/test-model-diagram-files/multiple-files/1_transition.csv

inst/tinytest/test-model-diagram-files/multiple-files/0_transition.csv

build/vignette.rds

tests/tinytest.R vignettes/advanced-modeling.Rmd vignettes/likelihood-free-mcmc.Rmd vignettes/implementation.Rmd vignettes/mixing.Rmd vignettes/run-multiple.Rmd vignettes/getting-started.Rmd man/epiworld-transition.Rd man/ModelSEIRCONN.Rd man/ModelDiffNet.Rd man/agents_smallworld.Rd man/ModelSIRD.Rd man/epiworld-gentime.Rd man/ModelSEIR.Rd man/LFMCMC.Rd man/ModelSEIRDCONN.Rd man/global-events.Rd man/ModelSIRCONN.Rd man/epiworldR-package.Rd man/ModelSIS.Rd man/epiworld-transmissions.Rd man/epiworld-repnum.Rd man/epiworldR-deprecated.Rd man/entities.Rd man/agents.Rd man/ModelSEIRD.Rd man/epiworld-summaries.Rd man/add_entities_from_dataframe.Rd man/epiworld-hospitalizations.Rd man/epiworld-history.Rd man/ModelSISD.Rd man/ModelSURV.Rd man/epiworld-methods.Rd man/ModelSIR.Rd man/tool.Rd man/ModelSIRDCONN.Rd man/ModelSIRMixing.Rd man/ModelSEIRMixingQuarantine.Rd man/ModelSEIRMixing.Rd man/epiworld-model-diagram.Rd man/run_multiple.Rd man/ModelSIRLogit.Rd man/virus.Rd

man/figures/sisd.png

man/figures/README-unnamed-chunk-4-3.png

man/figures/README-unnamed-chunk-4-2.png

man/figures/sirlogit.png

man/figures/README-logit-model-1.png

man/figures/README-seir-conn-figures-2.png

man/figures/README-sir-figures-2.png

man/figures/README-seir-conn-figures-3.png

man/figures/README-sir-figures-1.png

man/figures/seirmixing.png

man/figures/measlesmixing.png

man/figures/logo.png

man/figures/sirconnected.png

man/figures/sir.png

man/figures/sirdconnected.png

man/figures/README-unnamed-chunk-4-4.png

man/figures/measlesmixingriskquarantine.png

man/figures/sirmixing.png

man/figures/seir.png

man/figures/seirdconnected.png

man/figures/seird.png

man/figures/seirconnected.png

man/figures/README-unnamed-chunk-4-1.png

man/figures/README-multiple-example-1.png

man/figures/sird.png

man/figures/README-seir-conn-figures-1.png

man/figures/sis.png

man/figures/measlesschool.png

man/figures/README-transmission-net-1.png

man/figures/README-unnamed-chunk-6-1.png

man/figures/seirmixingquarantine.png

epiworldR documentation built on Dec. 22, 2025, 5:06 p.m.