epiworldR
Fast Agent-Based Epi Models

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Files in epiworldR
Fast Agent-Based Epi Models

configure
MD5
NEWS.md README.md
NAMESPACE
configure.ac
DESCRIPTION
LICENSE
cleanup
R/epiworldR-package.R R/model-methods.R R/ModelSEIR.R R/ModelMeaslesQuarantine.R R/make_saver.R R/ModelSEIRDCONN.R R/tool.R R/agents.R R/ModelSIR.R R/ModelSIRLogit.R R/ModelSIRCONN.R R/ModelSIRDCONN.R R/data.R R/plot_epi.R R/ModelSIRMixing.R
R/epiworldR-package.R.in
R/ModelSIS.R R/ModelSEIRD.R R/agents-methods.R R/ModelSURV.R R/arg-checks.R R/functions-renamed.R R/cpp11.R R/ModelDiffNet.R R/ModelDiagram.R R/LFMCMC.R R/ModelSIRD.R R/entity.R R/global-actions.R R/ModelSEIRCONN.R R/ModelSISD.R R/virus.R R/ModelSEIRMixing.R
src/Makevars.win
src/epimodels.cpp
src/tool.cpp
src/actions.cpp
src/db.cpp
src/agents.cpp
src/lfmcmc.cpp
src/model-diagram.cpp
src/model.cpp
src/virus.cpp
src/entities.cpp
src/Makevars.in
src/cpp11.cpp
src/epiworld-common.h
inst/CITATION
inst/include/epiworld/globalactions-bones.hpp
inst/include/epiworld/epiworld.hpp
inst/include/epiworld/userdata-bones.hpp
inst/include/epiworld/tool-bones.hpp
inst/include/epiworld/model-meat-print.hpp
inst/include/epiworld/virus-bones.hpp
inst/include/epiworld/entities-bones.hpp
inst/include/epiworld/config.hpp
inst/include/epiworld/model-meat.hpp
inst/include/epiworld/agent-meat-virus-sampling.hpp
inst/include/epiworld/agentssample-bones.hpp
inst/include/epiworld/modeldiagram-meat.hpp
inst/include/epiworld/randgraph.hpp
inst/include/epiworld/groupsampler-bones.hpp
inst/include/epiworld/agent-meat.hpp
inst/include/epiworld/progress.hpp
inst/include/epiworld/adjlist-meat.hpp
inst/include/epiworld/agent-actions-meat.hpp
inst/include/epiworld/entity-bones.hpp
inst/include/epiworld/globalevent-bones.hpp
inst/include/epiworld/entity-distribute-meat.hpp
inst/include/epiworld/modeldiagram-bones.hpp
inst/include/epiworld/agent-meat-state.hpp
inst/include/epiworld/globalactions-meat.hpp
inst/include/epiworld/entity-meat.hpp
inst/include/epiworld/random_graph.hpp
inst/include/epiworld/network-bones.hpp
inst/include/epiworld/database-meat.hpp
inst/include/epiworld/model-bones.hpp
inst/include/epiworld/viruses-bones.hpp
inst/include/epiworld/globalevent-meat.hpp
inst/include/epiworld/database-bones.hpp
inst/include/epiworld/seq_processing.hpp
inst/include/epiworld/tools-bones.hpp
inst/include/epiworld/queue-bones.hpp
inst/include/epiworld/agent-events-meat.hpp
inst/include/epiworld/tool-distribute-meat.hpp
inst/include/epiworld/groupsampler-meat.hpp
inst/include/epiworld/virus-distribute-meat.hpp
inst/include/epiworld/agent-bones.hpp
inst/include/epiworld/misc.hpp
inst/include/epiworld/userdata-meat.hpp
inst/include/epiworld/adjlist-bones.hpp
inst/include/epiworld/epiworld-macros.hpp
inst/include/epiworld/virus-meat.hpp
inst/include/epiworld/tool-meat.hpp
inst/include/epiworld/models/sir.hpp
inst/include/epiworld/models/seirconnected_logit.hpp
inst/include/epiworld/models/sirdconnected.hpp
inst/include/epiworld/models/surveillance.hpp
inst/include/epiworld/models/seirmixing.hpp
inst/include/epiworld/models/globalevents.hpp
inst/include/epiworld/models/sirlogit.hpp
inst/include/epiworld/models/diffnet.hpp
inst/include/epiworld/models/globalactions.hpp
inst/include/epiworld/models/seirconnected.hpp
inst/include/epiworld/models/sisd.hpp
inst/include/epiworld/models/sirconnected.hpp
inst/include/epiworld/models/README.md
inst/include/epiworld/models/sis.hpp
inst/include/epiworld/models/seir.hpp
inst/include/epiworld/models/sird.hpp
inst/include/epiworld/models/sirmixing.hpp
inst/include/epiworld/models/measlesquarantine.hpp
inst/include/epiworld/models/init-functions.hpp
inst/include/epiworld/models/models.hpp
inst/include/epiworld/models/seird.hpp
inst/include/epiworld/models/seirdconnected.hpp
inst/include/epiworld/templates/viruses.hpp
inst/include/epiworld/math/lfmcmc.hpp
inst/include/epiworld/math/distributions.hpp
inst/include/epiworld/math/lfmcmc/lfmcmc-meat.hpp
inst/include/epiworld/math/lfmcmc/lfmcmc-bones.hpp
inst/include/epiworld/math/lfmcmc/lfmcmc-meat-print.hpp
inst/doc/advanced-modeling.Rmd
inst/doc/implementation.html
inst/doc/advanced-modeling.R
inst/doc/mixing.html
inst/doc/getting-started.R inst/doc/likelihood-free-mcmc.R inst/doc/likelihood-free-mcmc.Rmd inst/doc/run-multiple.R
inst/doc/likelihood-free-mcmc.html
inst/doc/mixing.R inst/doc/implementation.Rmd
inst/doc/advanced-modeling.html
inst/doc/run-multiple.html
inst/doc/getting-started.html
inst/doc/mixing.Rmd inst/doc/run-multiple.Rmd inst/doc/getting-started.Rmd inst/tinytest/test-surv.R inst/tinytest/test-seirmixing.R inst/tinytest/test-sis.R inst/tinytest/test-sirmixing.R inst/tinytest/test-sirconn.R inst/tinytest/test-agents-and-dist-virus-tool.R inst/tinytest/test-diffnet.R inst/tinytest/test-seirconn.R inst/tinytest/test-sir.R inst/tinytest/test-get.R inst/tinytest/test-sird.R inst/tinytest/test-seird.R inst/tinytest/test-model-methods.R inst/tinytest/test-measles-quarantine-errors.R inst/tinytest/test-seir.R inst/tinytest/test-sirlogit.R inst/tinytest/test-seirdconn.R inst/tinytest/test-lfmcmc.R inst/tinytest/test-tool.R inst/tinytest/test-multiple.R inst/tinytest/test-measles-quarantine-math.R inst/tinytest/test-model-diagram.R inst/tinytest/test-sirdconn.R inst/tinytest/test-virus.R inst/tinytest/test-sisd.R
inst/tinytest/test-model-diagram-files/single-file-transitions.txt
inst/tinytest/test-model-diagram-files/multiple-files/7_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/9_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/6_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/4_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/5_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/3_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/1_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/8_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/0_transition.csv
inst/tinytest/test-model-diagram-files/multiple-files/2_transition.csv
build/vignette.rds
build/partial.rdb
vignettes/advanced-modeling.Rmd vignettes/likelihood-free-mcmc.Rmd vignettes/implementation.Rmd vignettes/mixing.Rmd vignettes/run-multiple.Rmd vignettes/getting-started.Rmd man/ModelSEIRCONN.Rd man/ModelDiffNet.Rd man/agents_smallworld.Rd man/ModelSIRD.Rd man/ModelSEIR.Rd man/LFMCMC.Rd man/ModelSEIRDCONN.Rd man/epiworld-data.Rd man/global-events.Rd man/ModelSIRCONN.Rd man/epiworldR-package.Rd man/ModelSIS.Rd man/epiworldR-deprecated.Rd man/entities.Rd man/agents.Rd man/ModelSEIRD.Rd man/ModelSISD.Rd man/ModelSURV.Rd man/epiworld-methods.Rd man/ModelSIR.Rd man/tool.Rd man/ModelSIRDCONN.Rd man/ModelSIRMixing.Rd man/ModelMeaslesQuarantine.Rd man/ModelSEIRMixing.Rd man/epiworld-model-diagram.Rd man/run_multiple.Rd man/ModelSIRLogit.Rd man/virus.Rd
man/figures/README-unnamed-chunk-4-3.png
man/figures/README-unnamed-chunk-4-2.png
man/figures/README-logit-model-1.png
man/figures/README-seir-conn-figures-2.png
man/figures/README-sir-figures-2.png
man/figures/README-seir-conn-figures-3.png
man/figures/README-sir-figures-1.png
man/figures/README-unnamed-chunk-4-4.png
man/figures/README-unnamed-chunk-4-1.png
man/figures/README-multiple-example-1.png
man/figures/README-seir-conn-figures-1.png
man/figures/README-transmission-net-1.png
man/figures/README-unnamed-chunk-6-1.png
epiworldR documentation built on June 8, 2025, 1:48 p.m.

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