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tests/testthat/_snaps/check_simulator_inputs.md
In epizootic: Spatially Explicit Population Models of Disease Transmission in Wildlife
minimal inputs [plain]
Minimal inputs required to run simulation are missing.
x Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
minimal inputs [ansi]
[1m[22mMinimal inputs required to run simulation are missing.
[31mx[39m Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
minimal inputs [unicode]
Minimal inputs required to run simulation are missing.
✖ Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
minimal inputs [fancy]
[1m[22mMinimal inputs required to run simulation are missing.
[31m✖[39m Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
check error handling for initial abundance [plain]
initial_abundance must be a numeric vector, raster, matrix, or array.
x initial_abundance is a string.
initial_abundance has 1 row.
x There should be 2 rows (compartments x stages).
initial_abundance has 5 columns.
x There should be 6 columns.
check error handling for initial abundance [ansi]
[1m[22minitial_abundance must be a numeric vector, raster, matrix, or array.
[31mx[39m initial_abundance is a string.
[1m[22minitial_abundance has 1 row.
[31mx[39m There should be 2 rows (compartments x stages).
[1m[22minitial_abundance has 5 columns.
[31mx[39m There should be 6 columns.
check error handling for initial abundance [unicode]
initial_abundance must be a numeric vector, raster, matrix, or array.
✖ initial_abundance is a string.
initial_abundance has 1 row.
✖ There should be 2 rows (compartments x stages).
initial_abundance has 5 columns.
✖ There should be 6 columns.
check error handling for initial abundance [fancy]
[1m[22minitial_abundance must be a numeric vector, raster, matrix, or array.
[31m✖[39m initial_abundance is a string.
[1m[22minitial_abundance has 1 row.
[31m✖[39m There should be 2 rows (compartments x stages).
[1m[22minitial_abundance has 5 columns.
[31m✖[39m There should be 6 columns.
check error handling for breeding season length [plain]
There are 1 missing values in the breeding_season_length object.
The length of `season_lengths` must equal `seasons`.
i `seasons` = 2.
x `season_lengths` = 300, 100, and 65.
check error handling for breeding season length [ansi]
[1m[22mThere are 1 missing values in the breeding_season_length object.
[1m[22mThe length of `season_lengths` must equal `seasons`.
[36mi[39m `seasons` = 2.
[31mx[39m `season_lengths` = 300, 100, and 65.
check error handling for breeding season length [unicode]
There are 1 missing values in the breeding_season_length object.
The length of `season_lengths` must equal `seasons`.
ℹ `seasons` = 2.
✖ `season_lengths` = 300, 100, and 65.
check error handling for breeding season length [fancy]
[1m[22mThere are 1 missing values in the breeding_season_length object.
[1m[22mThe length of `season_lengths` must equal `seasons`.
[36mℹ[39m `seasons` = 2.
[31m✖[39m `season_lengths` = 300, 100, and 65.
check error handling for mortality [plain]
Each vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
`mortality` must be a vector or list, not a <RasterLayer> object.
Each vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for mortality [ansi]
[1m[22mEach vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
[1m[22m`mortality` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mEach vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for mortality [unicode]
Each vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
`mortality` must be a vector or list, not a <RasterLayer> object.
Each vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for mortality [fancy]
[1m[22mEach vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
[1m[22m`mortality` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mEach vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for fecundity [plain]
Each vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
`fecundity` must be a vector or list, not a <RasterLayer> object.
vectors inside `fecundity` and `fecundity_unit` must be the same length.
* `fecundity` vectors are lengths 3 and 3.
* `fecundity_unit` vectors are lengths 3 and 2.
fecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
Vectors inside `fecundity` and `fecundity_mask` must be the same length.
* `fecundity` has vectors of length 3.
* `fecundity_mask` has vectors of length 4.
fecundity_mask values must be 0 or 1
check error handling for fecundity [ansi]
[1m[22mEach vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
[1m[22m`fecundity` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mvectors inside `fecundity` and `fecundity_unit` must be the same length.
[36m*[39m `fecundity` vectors are lengths 3 and 3.
[36m*[39m `fecundity_unit` vectors are lengths 3 and 2.
[1m[22mfecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
[1m[22mVectors inside `fecundity` and `fecundity_mask` must be the same length.
[36m*[39m `fecundity` has vectors of length 3.
[36m*[39m `fecundity_mask` has vectors of length 4.
[1m[22mfecundity_mask values must be 0 or 1
check error handling for fecundity [unicode]
Each vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
`fecundity` must be a vector or list, not a <RasterLayer> object.
vectors inside `fecundity` and `fecundity_unit` must be the same length.
• `fecundity` vectors are lengths 3 and 3.
• `fecundity_unit` vectors are lengths 3 and 2.
fecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
Vectors inside `fecundity` and `fecundity_mask` must be the same length.
• `fecundity` has vectors of length 3.
• `fecundity_mask` has vectors of length 4.
fecundity_mask values must be 0 or 1
check error handling for fecundity [fancy]
[1m[22mEach vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
[1m[22m`fecundity` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mvectors inside `fecundity` and `fecundity_unit` must be the same length.
[36m•[39m `fecundity` vectors are lengths 3 and 3.
[36m•[39m `fecundity_unit` vectors are lengths 3 and 2.
[1m[22mfecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
[1m[22mVectors inside `fecundity` and `fecundity_mask` must be the same length.
[36m•[39m `fecundity` has vectors of length 3.
[36m•[39m `fecundity_mask` has vectors of length 4.
[1m[22mfecundity_mask values must be 0 or 1
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minimal inputs [plain]
Minimal inputs required to run simulation are missing.
x Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
minimal inputs [ansi]
[1m[22mMinimal inputs required to run simulation are missing.
[31mx[39m Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
minimal inputs [unicode]
Minimal inputs required to run simulation are missing.
✖ Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
minimal inputs [fancy]
[1m[22mMinimal inputs required to run simulation are missing.
[31m✖[39m Your input does not include time_steps, populations, initial_abundance, carrying_capacity, fecundity, mortality, transmission, and simulation_order.
check error handling for initial abundance [plain]
initial_abundance must be a numeric vector, raster, matrix, or array.
x initial_abundance is a string.
initial_abundance has 1 row.
x There should be 2 rows (compartments x stages).
initial_abundance has 5 columns.
x There should be 6 columns.
check error handling for initial abundance [ansi]
[1m[22minitial_abundance must be a numeric vector, raster, matrix, or array.
[31mx[39m initial_abundance is a string.
[1m[22minitial_abundance has 1 row.
[31mx[39m There should be 2 rows (compartments x stages).
[1m[22minitial_abundance has 5 columns.
[31mx[39m There should be 6 columns.
check error handling for initial abundance [unicode]
initial_abundance must be a numeric vector, raster, matrix, or array.
✖ initial_abundance is a string.
initial_abundance has 1 row.
✖ There should be 2 rows (compartments x stages).
initial_abundance has 5 columns.
✖ There should be 6 columns.
check error handling for initial abundance [fancy]
[1m[22minitial_abundance must be a numeric vector, raster, matrix, or array.
[31m✖[39m initial_abundance is a string.
[1m[22minitial_abundance has 1 row.
[31m✖[39m There should be 2 rows (compartments x stages).
[1m[22minitial_abundance has 5 columns.
[31m✖[39m There should be 6 columns.
check error handling for breeding season length [plain]
There are 1 missing values in the breeding_season_length object.
The length of `season_lengths` must equal `seasons`.
i `seasons` = 2.
x `season_lengths` = 300, 100, and 65.
check error handling for breeding season length [ansi]
[1m[22mThere are 1 missing values in the breeding_season_length object.
[1m[22mThe length of `season_lengths` must equal `seasons`.
[36mi[39m `seasons` = 2.
[31mx[39m `season_lengths` = 300, 100, and 65.
check error handling for breeding season length [unicode]
There are 1 missing values in the breeding_season_length object.
The length of `season_lengths` must equal `seasons`.
ℹ `seasons` = 2.
✖ `season_lengths` = 300, 100, and 65.
check error handling for breeding season length [fancy]
[1m[22mThere are 1 missing values in the breeding_season_length object.
[1m[22mThe length of `season_lengths` must equal `seasons`.
[36mℹ[39m `seasons` = 2.
[31m✖[39m `season_lengths` = 300, 100, and 65.
check error handling for mortality [plain]
Each vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
`mortality` must be a vector or list, not a <RasterLayer> object.
Each vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for mortality [ansi]
[1m[22mEach vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
[1m[22m`mortality` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mEach vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for mortality [unicode]
Each vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
`mortality` must be a vector or list, not a <RasterLayer> object.
Each vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for mortality [fancy]
[1m[22mEach vector inside the `mortality` list must have 2 elements, one for each combination of stage & compartment.
[1m[22m`mortality` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mEach vector inside the `mortality` list must have 6 elements, one for each combination of stage & compartment.
check error handling for fecundity [plain]
Each vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
`fecundity` must be a vector or list, not a <RasterLayer> object.
vectors inside `fecundity` and `fecundity_unit` must be the same length.
* `fecundity` vectors are lengths 3 and 3.
* `fecundity_unit` vectors are lengths 3 and 2.
fecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
Vectors inside `fecundity` and `fecundity_mask` must be the same length.
* `fecundity` has vectors of length 3.
* `fecundity_mask` has vectors of length 4.
fecundity_mask values must be 0 or 1
check error handling for fecundity [ansi]
[1m[22mEach vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
[1m[22m`fecundity` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mvectors inside `fecundity` and `fecundity_unit` must be the same length.
[36m*[39m `fecundity` vectors are lengths 3 and 3.
[36m*[39m `fecundity_unit` vectors are lengths 3 and 2.
[1m[22mfecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
[1m[22mVectors inside `fecundity` and `fecundity_mask` must be the same length.
[36m*[39m `fecundity` has vectors of length 3.
[36m*[39m `fecundity_mask` has vectors of length 4.
[1m[22mfecundity_mask values must be 0 or 1
check error handling for fecundity [unicode]
Each vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
`fecundity` must be a vector or list, not a <RasterLayer> object.
vectors inside `fecundity` and `fecundity_unit` must be the same length.
• `fecundity` vectors are lengths 3 and 3.
• `fecundity_unit` vectors are lengths 3 and 2.
fecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
Vectors inside `fecundity` and `fecundity_mask` must be the same length.
• `fecundity` has vectors of length 3.
• `fecundity_mask` has vectors of length 4.
fecundity_mask values must be 0 or 1
check error handling for fecundity [fancy]
[1m[22mEach vector inside the `fecundity` list must have 2 elements, one for each combination of stage and compartment. Or, provide a fecundity mask so that fecundity values may be assigned to the appropriate stages and compartments.
[1m[22m`fecundity` must be a vector or list, not a [34m<RasterLayer>[39m object.
[1m[22mvectors inside `fecundity` and `fecundity_unit` must be the same length.
[36m•[39m `fecundity` vectors are lengths 3 and 3.
[36m•[39m `fecundity_unit` vectors are lengths 3 and 2.
[1m[22mfecundity_unit values must be 0 or 1. Unit values are 1, 0, and 2.
[1m[22mVectors inside `fecundity` and `fecundity_mask` must be the same length.
[36m•[39m `fecundity` has vectors of length 3.
[36m•[39m `fecundity_mask` has vectors of length 4.
[1m[22mfecundity_mask values must be 0 or 1
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