R/data.R

In epm: EcoPhyloMapper

##' @title Eco Phylo Mapper datasets
##'
##' @description Included datasets in \code{epm}
##' 
##' @name epm-example
##' @docType data
##' @format NULL
##' 
##' @aliases tamiasEPM tamiasPolyList tamiasTraits tamiasTree tamiasTreeSet
##'
##'@details Included north american chipmunk dataset: \cr
##'tamiasTree is a phylogeny for chipmunks from Zelditch et al. 2017 \cr
##'tamiasTreeSet is a distribution of 10 phylogenies for chipmunks, extracted
##'from the mammal tree from Upham et al. 2019
##'tamiasTraits is a geometric morphometrics dataset of mean values for 
##'chipmunks from Zelditch et al. 2017 \cr
##'tamiasPolyList is a set of geographic ranges for chimpunks from IUCN 2021.\cr
##'tamiasEPM is an \code{epmGrid} object created with \code{\link{createEPMgrid}} 
##'using these datasets.
##'
##'@references Zelditch, M. L., Ye, J., Mitchell, J. S., & Swiderski, D. L.
##'(2017). Rare ecomorphological convergence on a complex adaptive landscape:
##'Body size and diet mediate evolution of jaw shape in squirrels (Sciuridae).
##'Evolution, 1–17. https://doi.org/10.1111/evo.13168 \cr
##'
##'Upham, N. S., Esselstyn, J. A., & Jetz, W. (2019). Inferring the mammal tree: 
##'Species-level sets of phylogenies for questions in ecology, evolution, and 
##'conservation. PLoS Biology, 17(12), e3000494. 
##'https://doi.org/10.1371/journal.pbio.3000494 \cr
##'
##'IUCN 2021. The IUCN Red List of Threatened Species. 2021-3. 
##'\url{https://www.iucnredlist.org}. Downloaded on 17 March 2021.
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##'
"tamiasEPM"
##' @name epm-example
##' @rdname epm-example
##' @format NULL
"tamiasPolyList"
##' @name epm-example
##' @rdname epm-example
##' @format NULL
"tamiasTraits"
##' @name epm-example
##' @rdname epm-example 
##' @format NULL
"tamiasTree"
##' @name epm-example
##' @rdname epm-example
##' @format NULL
"tamiasTreeSet"
##' @name epm-example
##' @rdname epm-example
##' @format NULL