dot_plot: creates a dot-plot of safety data showing the absolute and...

In eudract: Creates Safety Results Summary in XML to Upload to EudraCT, or ClinicalTrials.gov

creates a dot-plot of safety data showing the absolute and relative risks

Description

creates a dot-plot of safety data showing the absolute and relative risks

Usage

dot_plot(
  safety,
  type = c("non_serious", "serious"),
  reference = safety$GROUP$title[1],
  size = 95,
  text_width = 10,
  base = 2,
  valid_estimates = TRUE
)

Arguments

safety	an object created by safety_summary or by relative_risk, in case you want to re-order or filter the choice of rows.
type	a choice of "non_serious" (default) or "serious" as to which type of AE to report on
reference	character vector naming the reference arm for the calculations. Defaults to the first row of the safety$GROUP.
size	a number between 0-100, giving the size of the confidence interval. Default is 95.
text_width	Integer giving a target width to which the labels are wrapped. Defaults to 10.
base	numeric value to which a log scale uses as tick marks. Suggest powers of 2, or 5.
valid_estimates	a logical, which determines if only terms with valid estimates of relative risk are included in the table. The alternative is to include terms with zeroes.

Details

This is essentially a list of two ggplot objects joined together in a list, named as "left.panel" and "right.panel". They can each be individually edited if needed

Value

a graphical object that shows the estimates and CI of relative and absolute risk.

See Also

safety_summary relative_risk [relative_risks()]

Examples

safety_statistics <- safety_summary(safety,
           exposed=c("Experimental"=60,"Control"=67))
head( relative_risk(safety_statistics, type="serious") )
fig <- dot_plot(safety_statistics, type="non_serious", base=4)
fig
fig$left.panel <- fig$left.panel + ggplot2::labs(title="Absolute Risk")
fig
temp <- tempfile(fileext=".png")
png(filename = temp)
print(fig)
dev.off()

eudract documentation built on Sept. 11, 2024, 8:08 p.m.