europepmc: R Interface to the Europe PubMed Central RESTful Web Service

An R Client for the Europe PubMed Central RESTful Web Service. It gives access to both metadata on life science literature and open access full texts. Europe PMC indexes all PubMed content and other literature sources including Agricola, a bibliographic database of citations to the agricultural literature, or Biological Patents. In addition to bibliographic metadata, the client allows users to fetch citations and reference lists. Links between life-science literature and other EBI databases, including ENA, PDB or ChEMBL are also accessible. No registration or API key is required. See the vignettes for usage examples.

Author
Najko Jahn [aut, cre, cph]
Date of publication
2016-07-13 10:19:21
Maintainer
Najko Jahn <najko.jahn@gmail.com>
License
GPL-3
Version
0.1.0
URLs

View on CRAN

Man pages

epmc_citations
Get citations for a given publication
epmc_db
Retrieve external database entities referenced in a given...
epmc_db_count
Retrieve the number of database links from Europe PMC...
epmc_details
Get details for individual records
epmc_ftxt
Fetch Europe PMC full texts
epmc_ftxt_book
Fetch Europe PMC books
epmc_hits
Get search result count
epmc_lablinks
Get links to external sources
epmc_lablinks_count
Summarise links to external sources
epmc_refs
Get references for a given publication
epmc_search
Search Europe PMC publication database
epmc_tm
Get text-mined terms
epmc_tm_count
Retrieve the number of database links from Europe PMC...
europepmc
europepmc - an R client for the Europe PMC RESTful article...

Files in this package

europepmc
europepmc/inst
europepmc/inst/doc
europepmc/inst/doc/rebi-vignettes.R
europepmc/inst/doc/rebi-vignettes.Rmd
europepmc/inst/doc/rebi-vignettes.html
europepmc/tests
europepmc/tests/testthat.R
europepmc/tests/testthat
europepmc/tests/testthat/test_epmc_tm_count.r
europepmc/tests/testthat/test_epmc_db_count.r
europepmc/tests/testthat/test_epmc_tm.r
europepmc/tests/testthat/test_epmc_db.r
europepmc/tests/testthat/test_epmc_search.r
europepmc/tests/testthat/test_epmc_details.r
europepmc/tests/testthat/test_epmc_lablinks_count.r
europepmc/tests/testthat/test_epmc_citations.r
europepmc/tests/testthat/test_epmc_ftxt_book.r
europepmc/tests/testthat/test_epmc_hits.r
europepmc/tests/testthat/test_epmc_refs.r
europepmc/tests/testthat/test_epmc_ftxt.r
europepmc/tests/testthat/test_epmc_lablinks.r
europepmc/NAMESPACE
europepmc/NEWS.md
europepmc/R
europepmc/R/epmc_ftxt_book.r
europepmc/R/epmc_db_count.r
europepmc/R/epmc_db.r
europepmc/R/epmc_tm_count.r
europepmc/R/epmc_lablinks_count.r
europepmc/R/epmc_ftxt.r
europepmc/R/epmc_lablinks.r
europepmc/R/utils.r
europepmc/R/epmc_refs.r
europepmc/R/epmc_citations.r
europepmc/R/defunct.r
europepmc/R/europepmc.r
europepmc/R/epmc_details.r
europepmc/R/epmc_search.r
europepmc/R/epmc_tm.r
europepmc/R/epmc_hits.r
europepmc/vignettes
europepmc/vignettes/rebi-vignettes.Rmd
europepmc/README.md
europepmc/MD5
europepmc/build
europepmc/build/vignette.rds
europepmc/DESCRIPTION
europepmc/man
europepmc/man/epmc_db.Rd
europepmc/man/epmc_lablinks_count.Rd
europepmc/man/epmc_search.Rd
europepmc/man/epmc_lablinks.Rd
europepmc/man/epmc_tm_count.Rd
europepmc/man/epmc_ftxt.Rd
europepmc/man/europepmc.Rd
europepmc/man/epmc_tm.Rd
europepmc/man/epmc_db_count.Rd
europepmc/man/epmc_citations.Rd
europepmc/man/epmc_refs.Rd
europepmc/man/epmc_hits.Rd
europepmc/man/epmc_ftxt_book.Rd
europepmc/man/epmc_details.Rd