europepmc: R Interface to the Europe PubMed Central RESTful Web Service
Version 0.1.4

An R Client for the Europe PubMed Central RESTful Web Service (see for more information). It gives access to both metadata on life science literature and open access full texts. Europe PMC indexes all PubMed content and other literature sources including Agricola, a bibliographic database of citations to the agricultural literature, or Biological Patents. In addition to bibliographic metadata, the client allows users to fetch citations and reference lists. Links between life-science literature and other EBI databases, including ENA, PDB or ChEMBL are also accessible. No registration or API key is required. See the vignettes for usage examples.

Browse man pages Browse package API and functions Browse package files

AuthorNajko Jahn [aut, cre, cph]
Date of publication2017-03-20 17:34:19 UTC
MaintainerNajko Jahn <najko.jahn@gmail.com>
LicenseGPL-3
Version0.1.4
URL http://github.com/ropensci/europepmc/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("europepmc")

Man pages

epmc_citations: Get citations for a given publication
epmc_db: Retrieve external database entities referenced in a given...
epmc_db_count: Retrieve the number of database links from Europe PMC...
epmc_details: Get details for individual records
epmc_ftxt: Fetch Europe PMC full texts
epmc_ftxt_book: Fetch Europe PMC books
epmc_hits: Get search result count
epmc_lablinks: Get links to external sources
epmc_lablinks_count: Summarise links to external sources
epmc_profile: Obtain a summary of hit counts
epmc_refs: Get references for a given publication
epmc_search: Search Europe PMC publication database
epmc_search_: Get one page of results when searching Europe PubMed Central
epmc_tm: Get text-mined terms
epmc_tm_count: Retrieve the number of database links from Europe PMC...
europepmc: europepmc - an R client for the Europe PMC RESTful article...

Functions

VERB_n Source code
base_uri Source code
batch_size Source code
chunks Source code
coarsen_code Source code
dblinkcount Source code
dblinkdata Source code
epmc_citations Man page Source code
epmc_db Man page Source code
epmc_db_count Man page Source code
epmc_details Man page Source code
epmc_ftxt Man page Source code
epmc_ftxt_book Man page Source code
epmc_hits Man page Source code
epmc_lablinks Man page Source code
epmc_lablinks_count Man page Source code
epmc_profile Man page Source code
epmc_refs Man page Source code
epmc_search Man page Source code
epmc_search_ Man page Source code
epmc_search_tmp Source code
epmc_search_tmp_ Source code
epmc_tm Man page Source code
epmc_tm_count Man page Source code
europepmc Man page
europepmc-package Man page
fix_list Source code
get_MESH Source code
get_author Source code
get_chemicals Source code
get_citations Source code
get_comments Source code
get_fulltext Source code
get_grants Source code
get_journal_info Source code
get_mesh_subheadings Source code
get_references Source code
lablinkxml Source code
make_path Source code
mpf Source code
parse_aut Source code
parse_ftxt Source code
parse_jn Source code
rebi_GET Source code
rebi_pageing Source code
rest_path Source code
search_publications Source code
transform_query Source code
val_args Source code

Files

inst
inst/doc
inst/doc/introducing-europepmc.R
inst/doc/introducing-europepmc.Rmd
inst/doc/introducing-europepmc.html
tests
tests/testthat.R
tests/testthat
tests/testthat/test_epmc_tm_count.r
tests/testthat/test_epmc_db_count.r
tests/testthat/test_epmc_tm.r
tests/testthat/test_epmc_profile.r
tests/testthat/test_epmc_db.r
tests/testthat/test_epmc_search.r
tests/testthat/test_epmc_details.r
tests/testthat/test_epmc_lablinks_count.r
tests/testthat/test_epmc_citations.r
tests/testthat/test_epmc_ftxt_book.r
tests/testthat/test_epmc_hits.r
tests/testthat/test_epmc_refs.r
tests/testthat/test_epmc_ftxt.r
tests/testthat/test_epmc_lablinks.r
NAMESPACE
NEWS.md
R
R/epmc_ftxt_book.r
R/epmc_db_count.r
R/epmc_db.r
R/epmc_tm_count.r
R/epmc_lablinks_count.r
R/epmc_profile.r
R/epmc_ftxt.r
R/epmc_lablinks.r
R/utils.r
R/epmc_refs.r
R/epmc_citations.r
R/defunct.r
R/europepmc.r
R/epmc_details.r
R/tmp.r
R/epmc_search.r
R/epmc_tm.r
R/epmc_hits.r
vignettes
vignettes/introducing-europepmc.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/epmc_db.Rd
man/epmc_lablinks_count.Rd
man/epmc_search.Rd
man/epmc_lablinks.Rd
man/epmc_tm_count.Rd
man/epmc_ftxt.Rd
man/europepmc.Rd
man/epmc_tm.Rd
man/epmc_search_.Rd
man/epmc_db_count.Rd
man/epmc_profile.Rd
man/epmc_citations.Rd
man/epmc_refs.Rd
man/epmc_hits.Rd
man/epmc_ftxt_book.Rd
man/epmc_details.Rd
europepmc documentation built on May 19, 2017, 10:20 p.m.