Files in expands

Expanding Ploidy and Allele-Frequency on Nested Subpopulations

MD5

NEWS.md

NAMESPACE

DESCRIPTION

java/src/core/Subpopulation.java

java/src/core/ParallelSubpopulations.java

java/src/core/utils/CopyNumber.java

java/src/core/utils/AFtimesCopyNumber.java

java/src/core/utils/Common.java

java/src/core/utils/Measurement.java

java/src/core/utils/NotAValidCompositionException.java

java/uml/ParallelSubpopulations.tif

java/uml/EXPANDS.mdzip

java/uml/expands2.tif

R/sysdata.rda

R/assignQuantityToSP.R R/Utils.R R/plotSPs.R R/buildPhylo.R R/computeCellFrequencyDistributions.R R/clusterCellFrequencies.R R/runExPANdS.R R/assignQuantityToMutation.R R/assignMutations.R R/onLoad.R R/gatherEXPANDSoutput.R R/buildMultiSamplePhylo.R R/cellfrequency_pdf.R inst/doc/expands.pdf

inst/doc/expands.Rnw

inst/doc/expands.R

inst/java/expands.jar

build/vignette.rds

vignettes/ID_MRD_001_metKidney.cbs

vignettes/ID_MRD_001_metLung.cbs

vignettes/ID_MRD_001_metKidney.sps

vignettes/expands.Rnw

vignettes/ID_MRD_001_primPancreas.sps

vignettes/ID_MRD_001.dist

vignettes/ID_MRD_001_metLung.sps

vignettes/expands.bib

vignettes/tmp.tree

vignettes/ID_MRD_001.tree

vignettes/ID_MRD_001_primPancreas.cbs

data/snv.rda

data/cbs.rda

data/simulation.rda

man/roi.Rd man/runExPANdS.Rd man/assignQuantityToMutation.Rd man/cbs.Rd man/assignQuantityToSP.Rd man/cellfrequency_pdf.Rd man/buildMultiSamplePhylo.Rd man/assignMutations.Rd man/snv.Rd man/buildPhylo.Rd man/gatherEXPANDSoutput.Rd man/simulation.Rd man/plotSPs.Rd man/clusterCellFrequencies.Rd man/computeCellFrequencyDistributions.Rd

expands documentation built on Sept. 5, 2021, 5:18 p.m.