Files in expands
Expanding Ploidy and Allele-Frequency on Nested Subpopulations

MD5
NEWS.md
DESCRIPTION
NAMESPACE
inst/doc/expands.R inst/doc/expands.pdf
inst/doc/expands.Rnw
inst/java/expands.jar
vignettes/ID_MRD_001_metKidney.cbs
vignettes/tmp.tree
vignettes/ID_MRD_001_primPancreas.cbs
vignettes/expands.bib
vignettes/ID_MRD_001_metLung.sps
vignettes/expands.Rnw
vignettes/ID_MRD_001_metKidney.sps
vignettes/ID_MRD_001_metLung.cbs
vignettes/ID_MRD_001_primPancreas.sps
R/assignMutations.R R/plotSPs.R R/computeCellFrequencyDistributions.R R/clusterCellFrequencies.R R/Utils.R R/buildPhylo.R R/assignQuantityToSP.R R/gatherEXPANDSoutput.R
R/sysdata.rda
R/assignQuantityToMutation.R R/runExPANdS.R R/buildMultiSamplePhylo.R R/onLoad.R R/cellfrequency_pdf.R man/assignMutations.Rd man/cbs.Rd man/runExPANdS.Rd man/roi.Rd man/buildMultiSamplePhylo.Rd man/plotSPs.Rd man/snv.Rd man/assignQuantityToMutation.Rd man/clusterCellFrequencies.Rd man/buildPhylo.Rd man/gatherEXPANDSoutput.Rd man/cellfrequency_pdf.Rd man/computeCellFrequencyDistributions.Rd man/simulation.Rd man/assignQuantityToSP.Rd
java/src/core/Subpopulation.java
java/src/core/ParallelSubpopulations.java
java/src/core/utils/AFtimesCopyNumber.java
java/src/core/utils/Measurement.java
java/src/core/utils/NotAValidCompositionException.java
java/src/core/utils/Common.java
java/src/core/utils/CopyNumber.java
java/uml/EXPANDS.mdzip
java/uml/expands2.tif
java/uml/ParallelSubpopulations.tif
build/vignette.rds
data/snv.rda
data/cbs.rda
data/simulation.rda
expands documentation built on June 30, 2018, 5:03 p.m.