exsic: Convenience Functions for Botanists to Create Specimens Indices

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The package provides tools for botanists, plant taxonomists, curators of plant genebanks and perhaps other biological collections.

Author
Reinhard Simon [aut, cre] (CIP), David M. Spooner [aut] (USDA), International Potato Center [cph]
Date of publication
2014-10-01 18:44:48
Maintainer
Reinhard Simon <R.SIMON@CGIAR.ORG>
License
MIT + file LICENSE
Version
1.1.1

View on CRAN

Man pages

coll.cite
Constructs a final citation of collector names.
exsic
Creates three botanical indices (exsiccatae or index of...
exsic-package
Provides botanists with convenience functions to create...
format.ASPT
A formatting scheme following ASPT (American Society of Plant...
format.NYBG
A formatting scheme following NYBG (New York Botanical...
format.PK
A formatting scheme following PK (Phytokeys) conventions for...
format.SBMG
A formatting scheme following SBMG (Systematic Botany...
index.citations
Creates an index of specimen citations
index.collections
Creates the index of collectors and their specimes.
index.countries
Creates a simple index of countries.
index.species
Creates a simple index of species.
index.species.short
A condensed list of species (listed within a line).
is.exsic
Checks table format
is.format
Checks if the data frame conforms to the expectations to a...
is.sortfilter
Checks if the data frame conforms to the expectations to sort...
potato
Wild potato specimen sample list
prepare.table
Prepare exsic table
read.exsic
Reads a table in .csv format.
section.exsic
Creates a section header
sort.specs
A sorting and filtering configuration data.frame
strip.final.dot
Strips a text of any final dots.
write.exsic
Writes the exsiccatae text

Files in this package

exsic
exsic/inst
exsic/inst/examples
exsic/inst/examples/exsic.R
exsic/inst/www
exsic/inst/www/ui.R
exsic/inst/www/server.R
exsic/inst/www/SBMG.html
exsic/inst/www/NYBG.html
exsic/inst/www/ASPT.html
exsic/inst/www/PK.html
exsic/inst/samples
exsic/inst/samples/exsic.R
exsic/inst/samples/exsic.csv
exsic/inst/reports
exsic/inst/reports/rep-species.Rnw
exsic/NAMESPACE
exsic/NEWS
exsic/data
exsic/data/config.rda
exsic/data/sort.specs.rda
exsic/R
exsic/R/utils.R
exsic/R/exsicnew.R
exsic/MD5
exsic/DESCRIPTION
exsic/man
exsic/man/write.exsic.Rd
exsic/man/section.exsic.Rd
exsic/man/potato.Rd
exsic/man/index.collections.Rd
exsic/man/exsic.Rd
exsic/man/coll.cite.Rd
exsic/man/format.PK.Rd
exsic/man/is.format.Rd
exsic/man/index.species.Rd
exsic/man/sort.specs.Rd
exsic/man/strip.final.dot.Rd
exsic/man/prepare.table.Rd
exsic/man/index.citations.Rd
exsic/man/exsic-package.Rd
exsic/man/format.SBMG.Rd
exsic/man/is.sortfilter.Rd
exsic/man/read.exsic.Rd
exsic/man/format.ASPT.Rd
exsic/man/format.NYBG.Rd
exsic/man/is.exsic.Rd
exsic/man/index.species.short.Rd
exsic/man/index.countries.Rd
exsic/LICENSE