exsic: Convenience Functions for Botanists to Create Specimens Indices
Version 1.1.1

The package provides tools for botanists, plant taxonomists, curators of plant genebanks and perhaps other biological collections.

Browse man pages Browse package API and functions Browse package files

AuthorReinhard Simon [aut, cre] (CIP), David M. Spooner [aut] (USDA), International Potato Center [cph]
Date of publication2014-10-01 18:44:48
MaintainerReinhard Simon <R.SIMON@CGIAR.ORG>
LicenseMIT + file LICENSE
Version1.1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("exsic")

Man pages

coll.cite: Constructs a final citation of collector names.
exsic: Creates three botanical indices (exsiccatae or index of...
exsic-package: Provides botanists with convenience functions to create...
format.ASPT: A formatting scheme following ASPT (American Society of Plant...
format.NYBG: A formatting scheme following NYBG (New York Botanical...
format.PK: A formatting scheme following PK (Phytokeys) conventions for...
format.SBMG: A formatting scheme following SBMG (Systematic Botany...
index.citations: Creates an index of specimen citations
index.collections: Creates the index of collectors and their specimes.
index.countries: Creates a simple index of countries.
index.species: Creates a simple index of species.
index.species.short: A condensed list of species (listed within a line).
is.exsic: Checks table format
is.format: Checks if the data frame conforms to the expectations to a...
is.sortfilter: Checks if the data frame conforms to the expectations to sort...
potato: Wild potato specimen sample list
prepare.table: Prepare exsic table
read.exsic: Reads a table in .csv format.
section.exsic: Creates a section header
sort.specs: A sorting and filtering configuration data.frame
strip.final.dot: Strips a text of any final dots.
write.exsic: Writes the exsiccatae text

Functions

add.dots Source code
coll.cite Man page Source code
compl.table Source code
exsic Man page Source code
exsic-package Man page
format.ASPT Man page
format.NYBG Man page
format.PK Man page
format.SBMG Man page
format.element Source code
format.exsic.rec Source code
group.specimens Source code
index.citations Man page Source code
index.collections Man page Source code
index.countries Man page Source code
index.species Man page Source code
index.species.short Man page Source code
is.exsic Man page Source code
is.format Man page Source code
is.sortfilter Man page Source code
potato Man page
prepare.table Man page Source code
read.exsic Man page Source code
section.exsic Man page Source code
sort.specs Man page
sort.tbl Source code
strip.final.dot Man page Source code
update.pb Source code
write.exsic Man page Source code

Files

inst
inst/examples
inst/examples/exsic.R
inst/www
inst/www/ui.R
inst/www/server.R
inst/www/SBMG.html
inst/www/NYBG.html
inst/www/ASPT.html
inst/www/PK.html
inst/samples
inst/samples/exsic.R
inst/samples/exsic.csv
inst/reports
inst/reports/rep-species.Rnw
NAMESPACE
NEWS
data
data/config.rda
data/sort.specs.rda
R
R/utils.R
R/exsicnew.R
MD5
DESCRIPTION
man
man/write.exsic.Rd
man/section.exsic.Rd
man/potato.Rd
man/index.collections.Rd
man/exsic.Rd
man/coll.cite.Rd
man/format.PK.Rd
man/is.format.Rd
man/index.species.Rd
man/sort.specs.Rd
man/strip.final.dot.Rd
man/prepare.table.Rd
man/index.citations.Rd
man/exsic-package.Rd
man/format.SBMG.Rd
man/is.sortfilter.Rd
man/read.exsic.Rd
man/format.ASPT.Rd
man/format.NYBG.Rd
man/is.exsic.Rd
man/index.species.short.Rd
man/index.countries.Rd
LICENSE
exsic documentation built on May 20, 2017, 1:09 a.m.