add_unique_event_identifiers | Add unique event identifiers to handle duplicate event... |
add_unique_identifiers_to_df | Add unique identifiers to a single events data frame |
alert | Display formatted alert messages |
bidsify | Save out pupil timeseries data in a BIDS-like structure |
bin | Bin pupil time series by averaging within time bins |
bin_pupil | Bin pupil data into specified time bins |
calc_euclidean_dist | Calculate Euclidean distance between points |
calculate_epoched_confounds | Calculate confounds for epoched data |
check_and_create_dir | Check and create directory if it doesn't exist |
check_baseline_epoch_counts | Check baseline and epoch counts match |
check_baseline_inputs | Check baseline input arguments |
check_baseline_mean | Check if baseline mean is zero |
check_column | Check if column exists in dataframe |
check_data | Check if object is of class eyeris |
check_epoch_input | Check epoch input for plotting |
check_epoch_manual_input_data | Check epoch manual input data structure |
check_epoch_manual_input_dfs | Check epoch manual input dataframe format |
check_epoch_msg_values | Check epoch message values against available events |
check_input | Check if input argument is provided |
check_limits | Check limits in wildcard mode |
check_pupil_cols | Check if pupil_raw column exists |
check_start_end_timestamps | Check start and end timestamps are balanced |
check_time_monotonic | Check time series monotonicity |
clean_string | Clean string by removing non-alphanumeric characters |
compute_baseline | Compute baseline correction for epoch data |
convert_nested_dt | Convert nested data.table objects to tibbles |
count_epochs | Count epochs and validate data is epoched |
counter_bar | Create a counter progress bar |
deblink | NA-pad blink events / missing data |
deblink_pupil | Internal function to remove blink artifacts from pupil data |
detransient | Remove pupil samples that are physiologically unlikely |
detransient_pupil | Internal function to remove transient artifacts from pupil... |
detrend | Detrend the pupil time series |
detrend_pupil | Internal function to detrend pupil data |
downsample | Downsample pupil time series with anti-aliasing filtering |
downsample_pupil | Internal function to downsample pupil data |
draw_na_lines | Draw vertical lines at NA positions |
draw_random_epochs | Draw random epochs for plotting |
epoch | Epoch (and baseline) pupil data based on custom event message... |
epoch_and_baseline_block | Block-by-block epoch and baseline handler |
epoch_manually | Manually epoch using provided start/end dataframes of... |
epoch_only_start_msg | Epoch based on a single event message (without explicit... |
epoch_pupil | Main epoching and baselining logic |
epoch_start_end_msg | Epoch using a start and an end message (explicit timestamps) |
epoch_start_msg_and_limits | Epoch using a start message with fixed limits around it |
error_handler | Handle errors with custom error classes |
evaluate_pipeline_step_params | Evaluate pipeline step parameters |
export_confounds_to_csv | Export confounds data to CSV files |
extract_baseline_epochs | Extract baseline epochs from timeseries data |
eyelink_asc_demo_dataset | Access example EyeLink .asc demo dataset file provided by the... |
eyelogger | Run 'eyeris' commands with automatic logging of R console's... |
eyeris_color_palette | Default color palette for eyeris plotting functions |
eyeris-package | eyeris: Flexible, Extensible, & Reproducible Pupillometry... |
filter_epochs | Filter epoch names from eyeris object |
find_baseline_structure | Find baseline structure name for a given epoch |
format_call_stack | Format call stack information for display |
get_block_numbers | Extract block numbers from eyeris object or character vector |
get_confounds_for_step | Calculate confounds for a single pupil data step |
get_timestamps | Obtain timestamps from events data |
glassbox | The opinionated "glass box" 'eyeris' pipeline |
index_metadata | Index metadata from dataframe |
interpolate | Interpolate missing pupil samples |
interpolate_pupil | Interpolate missing pupil data using linear interpolation |
load_asc | Load and parse SR Research EyeLink '.asc' files |
lpfilt | Lowpass filtering of time series data |
lpfilt_pupil | Internal function to lowpass filter pupil data |
make_baseline_label | Create baseline label for epoch data |
make_epoch_label | Generate epoch label from events and data |
make_gallery | Create interactive epoch gallery report |
make_md_table | Create markdown table from dataframe |
make_md_table_multiline | Create multiline markdown table from dataframe |
make_prog_summary_plot | Create progressive preprocessing summary plot |
make_report | Create eyeris report |
merge_events_with_timeseries | Process event messages and merge with timeseries |
normalize_gaze_coords | Normalize gaze coordinates to screen-relative units |
parse_call_stack | Parse call stack information |
parse_eyelink_info | Parse EyeLink version and model information |
pipeline_handler | Build a generic operation (extension) for the 'eyeris'... |
plot_detrend_overlay | Internal helper to plot detrending overlay |
plot.eyeris | Plot pre-processed pupil data from 'eyeris' |
plot_gaze_heatmap | Create gaze heatmap of eye coordinates |
plot_pupil_distribution | Plot pupil distribution histogram |
plot_with_seed | Plot with seed handling for glassbox pipeline |
print_lightbox_img_html | Print lightbox image HTML |
print_plots | Print plots in markdown format |
process_epoch_and_baselines | Epoch and baseline processor |
progress_bar | Create a progress bar for tracking operations |
prompt_user | Prompt user for continuation |
render_report | Render R Markdown report |
robust_plot | Robust plotting function with error handling |
sanitize_event_tag | Sanitize event tag string into canonical epoch label |
save_detrend_plots | Save detrend plots for each block |
save_progressive_summary_plots | Save progressive summary plots for each block |
slice_epoch | Slice epoch from raw timeseries data |
slice_epochs_no_limits | Slice epochs with no explicit limits |
slice_epochs_with_limits | Slice epochs with explicit limits |
speed | Calculate pupil speed using finite differences |
summarize_confounds | Extract confounding variables calculated separately for each... |
tag_blinks | Tag blinks in pupil data |
tag_gaze_coords | Tag gaze coordinates as on/off screen |
tick | Tick a progress bar |
zscore | Z-score pupil timeseries data |
zscore_pupil | Internal function to z-score pupil data |
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