R/data_documentation.R

In facilitation: A C++ Framework for Plant-Plant Interaction IBMs

#' A single species, 3 stages, no interactions simulation result
#'
#' @format A list of data and parameters, generated by \link{community}
#' @examples
#' ## Simple mathusian one species
#' init <- c(0,0,100)
#' ################# D G R disp
#' param <- matrix(c(5,1,0,5, 1,1,0,5, .5,0,10,5),nrow=3,byrow=TRUE)
#' malthusian <- community(10,3,param,init)
"malthusian"

#' A simulation result with two very different species
#'
#' @format A list of data and parameters, generated by \link{community}
#' @examples
#' ### Two species competition with growth limitation
#' nstages <- c(3,2)
#' init <- list(c(100,0,10),c(100,30))
#' param1 <- create.parameters(D=c(1,2,.5),G=c(1,1),R=10,dispersal=30,radius=c(0,.5,3))
#' param2 <- create.parameters(D=c(1,.5),G=c(1),R=4,dispersal=5,radius=c(1,5))
#' param  <- rbind(param1,param2)
#' interD <- matrix(c(0,0,0,0,0, 0,-1,0,0,0, 0,0,-2,0,-1, 0,0,-1,0,0, 0,0,-1,0,-2),ncol=5)
#' interG <- matrix(c(0,0,0,0,-.5, 0,0,0,0,-.5, 0,0,0,0,0, 0,0,0,0,-.8, 0,0,0,0,0),ncol=5)
#' twospecies <- community(10,nstages,param,init,interactionsD=interD,interactionsG=interG)
"twospecies"