View source: R/utilities_fsvdraws.R
cormat.fsvdraws | R Documentation |
cormat
extracts draws from the model-implied correlation matrix
from an fsvdraws
object for all points in time which have been
stored.
## S3 method for class 'fsvdraws'
cormat(x, timepoints = "all", ...)
x |
Object of class |
timepoints |
Vector indicating at which point(s) in time (of those that have been stored during sampling) the correlation matrices should be extracted. Can also be "all" or "last". |
... |
Ignored. |
Array of dimension m
times m
times draws
times timepoints
containing the posterior draws for the
model-implied covariance matrix.
Currently crudely implemented as a double loop in pure R, may be slow.
Other extractors:
covmat.fsvdraws()
,
runningcormat()
,
runningcovmat()
set.seed(1)
sim <- fsvsim(n = 500, series = 3, factors = 1) # simulate
res <- fsvsample(sim$y, factors = 1, keeptime = "all") # estimate
cors <- cormat(res, "last") # extract
# Trace plot of determinant of posterior correlation matrix
# at time t = n = 500:
detdraws <- apply(cors[,,,1], 3, det)
ts.plot(detdraws)
abline(h = mean(detdraws), col = 2) # posterior mean
abline(h = median(detdraws), col = 4) # posterior median
abline(h = det(cormat(sim, "last")[,,1]), col = 3) # implied by DGP
# Trace plot of draws from posterior correlation of Sim1 and Sim2 at
# time t = n = 500:
ts.plot(cors[1,2,,1])
abline(h = cormat(sim, "last")[1,2,1], col = 3) # "true" value
# Smoothed kernel density estimate:
plot(density(cors[1,2,,1], adjust = 2))
# Summary statistics:
summary(cors[1,2,,1])
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