T1D_application_data: Data for T1D application
In fcfdr: Flexible cFDR
Description
Usage
Format
Details
Description
A data.frame containing the rsID, chromosome (CHR19) and base pair position (BP19) in hg19,
reference allele (REF), alternative allele (ALLT), type 1 diabetes GWAS p-value (T1D_pval),
minor allele frequency (MAF), LDAK weight (LDAK_weight), rheumatoid arthritis GWAS p-value (RA_pval),
binary regulatory factor binding site overlap (DGF), average H3K27ac fold change value
in T1D-relevant cell types (H3K27ac) for 113,543 SNPs in the T1D GWAS (https://www.nature.com/articles/ng.3245)
Usage
1
Format
A data frame with 113543 rows and 11 variables:
Details
Minor allele frequencies estimated from the CEU sub-population samples
in the 1000 Genomes Project Phase 3 data set. Missing values were replaced
by drawing samples from the empirical distribution of MAFs
fcfdr documentation built on Feb. 7, 2022, 9:07 a.m.
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Description Usage Format Details
Description
A data.frame containing the rsID, chromosome (CHR19) and base pair position (BP19) in hg19, reference allele (REF), alternative allele (ALLT), type 1 diabetes GWAS p-value (T1D_pval), minor allele frequency (MAF), LDAK weight (LDAK_weight), rheumatoid arthritis GWAS p-value (RA_pval), binary regulatory factor binding site overlap (DGF), average H3K27ac fold change value in T1D-relevant cell types (H3K27ac) for 113,543 SNPs in the T1D GWAS (https://www.nature.com/articles/ng.3245)
Usage
1 |
Format
A data frame with 113543 rows and 11 variables:
Details
Minor allele frequencies estimated from the CEU sub-population samples in the 1000 Genomes Project Phase 3 data set. Missing values were replaced by drawing samples from the empirical distribution of MAFs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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