match_ind_maf: Function to downsample independent SNPs to match MAF...
In fcfdr: Flexible cFDR
Description
Usage
Arguments
Details
Value
View source: R/flexible_cfdr.R
Description
Matches MAF distribution of independent set of SNPs to MAF distribution of whole set of SNPs to avoid MAF-based confounding.
Usage
1
match_ind_maf(maf, indep_index)
Arguments
maf
minor allele frequencies of (all) SNPs
indep_index
indices of independent SNPs
Details
Must supply maf values from the whole data set, not just the independent SNPs.
Value
indices of independent SNP in chosen in sample
fcfdr documentation built on Feb. 7, 2022, 9:07 a.m.
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Description Usage Arguments Details Value
View source: R/flexible_cfdr.R
Description
Matches MAF distribution of independent set of SNPs to MAF distribution of whole set of SNPs to avoid MAF-based confounding.
Usage
1 | match_ind_maf(maf, indep_index)
|
Arguments
maf |
minor allele frequencies of (all) SNPs |
indep_index |
indices of independent SNPs |
Details
Must supply maf values from the whole data set, not just the independent SNPs.
Value
indices of independent SNP in chosen in sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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