fdasrvf: Elastic Functional Data Analysis

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Functions to support functional data analysis using the square root velocity framework.

Author
J. Derek Tucker <jdtuck@sandia.gov>
Date of publication
2016-09-15 08:14:08
Maintainer
J. Derek Tucker <jdtuck@sandia.gov>
License
GPL-3
Version
1.7.0

View on CRAN

Man pages

align_fPCA
Group-wise function alignment and PCA Extractions
beta
MPEG7 Curve Dataset
calc_shape_dist
Elastic Shape Distance
curve_geodesic
Form geodesic between two curvese
curve_karcher_cov
Curve Karcher Covariance
curve_karcher_mean
Karcher Mean of Curves
curve_pair_align
Pairwise align two curves
curve_principal_directions
Curve PCA
curve_srvf_align
Align Curves
curve_to_q
Convert to SRVF space
elastic.distance
Calculates two elastic distance
elastic.logistic
Elastic Logistic Regression
elastic.mlogistic
Elastic Multinomial Logistic Regression
elastic.prediction
Elastic Predicition from Regression Models
elastic.regression
Elastic Linear Regression
fdasrvf
Elastic Functional Data Analysis
f_to_srvf
Convert to SRSF
function_group_warp_bayes
Bayesian Group Warping
function_mean_bayes
Bayesian Karcher Mean Calculation
gauss_model
Gaussian model of functional data
gradient
Gradient using finite diferences
horizFPCA
Horizontal Functional Principal Component Analysis
optimum.reparam
Align two functions
outlier.detection
Outlier Detection
pair_align_functions
Align two functions
pair_align_functions_bayes
Align two functions
pair_align_image
Pairwise align two images This function aligns to images...
q_to_curve
Convert to curve space
reparam_curve
Align two curves
reparam_image
Find optimum reparameterization between two images
resamplecurve
Resample Curve
rgam
Random Warping
sample_shapes
Sample shapes from model
simu_data
Simulated two Gaussian Dataset
simu_warp
Aligned Simulated two Gaussian Dataset
smooth.data
Smooth Functions
SqrtMean
SRVF transform of warping functions
srsf_to_f
Convert SRSF to f
time_warping
Group-wise function alignment
toy_data
Distributed Gaussian Peak Dataset
toy_warp
Aligned Distributed Gaussian Peak Dataset
vertFPCA
Vertical Functional Principal Component Analysis
warp_f_gamma
Warp Function
warp_q_gamma
Warp SRSF

Files in this package

fdasrvf
fdasrvf/src
fdasrvf/src/Makevars
fdasrvf/src/fdaqmap
fdasrvf/src/fdaqmap/src
fdasrvf/src/fdaqmap/src/myVector.cpp
fdasrvf/src/fdaqmap/src/UnitSquareImage.cpp
fdasrvf/src/fdaqmap/incl
fdasrvf/src/fdaqmap/incl/myVector.h
fdasrvf/src/fdaqmap/incl/ImageRegister.h
fdasrvf/src/fdaqmap/incl/UnitSquareImage.h
fdasrvf/src/Makevars.win
fdasrvf/src/fdasrsf
fdasrvf/src/fdasrsf/bayesian.cpp
fdasrvf/src/fdasrsf/misc_funcs.h
fdasrvf/src/fdasrsf/DynamicProgrammingQ2.h
fdasrvf/src/fdasrsf/dp_grid.h
fdasrvf/src/fdasrsf/DynamicProgrammingQ2.cpp
fdasrvf/src/fdasrsf/mlogit_warp_grad.cpp
fdasrvf/src/fdasrsf/misc_funcs.cpp
fdasrvf/src/fdasrsf/mlogit_warp_grad.h
fdasrvf/src/fdasrsf/dp_grid.cpp
fdasrvf/src/fdasrsf/dp_nbhd.h
fdasrvf/src/wrapper.cpp
fdasrvf/src/gropt
fdasrvf/src/gropt/src
fdasrvf/src/gropt/src/ProductElement.cpp
fdasrvf/src/gropt/src/Oblique.cpp
fdasrvf/src/gropt/src/LRTRSR1.cpp
fdasrvf/src/gropt/src/Manifold.cpp
fdasrvf/src/gropt/src/randgen.cpp
fdasrvf/src/gropt/src/RSD.cpp
fdasrvf/src/gropt/src/RTRSD.cpp
fdasrvf/src/gropt/src/DriverMexProb.cpp
fdasrvf/src/gropt/src/StieVector.cpp
fdasrvf/src/gropt/src/RCG.cpp
fdasrvf/src/gropt/src/ProductManifold.cpp
fdasrvf/src/gropt/src/SharedSpace.cpp
fdasrvf/src/gropt/src/Timer.cpp
fdasrvf/src/gropt/src/SphereVector.cpp
fdasrvf/src/gropt/src/RWRBFGS.cpp
fdasrvf/src/gropt/src/L2Sphere.cpp
fdasrvf/src/gropt/src/RNewton.cpp
fdasrvf/src/gropt/src/LinearOPE.cpp
fdasrvf/src/gropt/src/StieBrockett.cpp
fdasrvf/src/gropt/src/Stiefel.cpp
fdasrvf/src/gropt/src/StieVariable.cpp
fdasrvf/src/gropt/src/EucVariable.cpp
fdasrvf/src/gropt/src/OrthGroupVariable.cpp
fdasrvf/src/gropt/src/EucFrechetMean.cpp
fdasrvf/src/gropt/src/ObliqueVariable.cpp
fdasrvf/src/gropt/src/OrthGroup.cpp
fdasrvf/src/gropt/src/Sphere.cpp
fdasrvf/src/gropt/src/ObliqueTestSparsePCA.cpp
fdasrvf/src/gropt/src/RBroydenFamily.cpp
fdasrvf/src/gropt/src/Problem.cpp
fdasrvf/src/gropt/src/RBFGS.cpp
fdasrvf/src/gropt/src/RTRSR1.cpp
fdasrvf/src/gropt/src/SolversTR.cpp
fdasrvf/src/gropt/src/Euclidean.cpp
fdasrvf/src/gropt/src/SolversLS.cpp
fdasrvf/src/gropt/src/Solvers.cpp
fdasrvf/src/gropt/src/EucQuadratic.cpp
fdasrvf/src/gropt/src/RTRNewton.cpp
fdasrvf/src/gropt/src/OrthGroupVector.cpp
fdasrvf/src/gropt/src/SphereVariable.cpp
fdasrvf/src/gropt/src/WeightedLowRank.cpp
fdasrvf/src/gropt/src/Spline.cpp
fdasrvf/src/gropt/src/LRBFGS.cpp
fdasrvf/src/gropt/src/DriverElasticCurvesRO.cpp
fdasrvf/src/gropt/src/ElasticCurvesReparam.cpp
fdasrvf/src/gropt/src/LowRank.cpp
fdasrvf/src/gropt/src/L2SphereVariable.cpp
fdasrvf/src/gropt/src/LowRankVariable.cpp
fdasrvf/src/gropt/src/TestElasticCurvesRO.cpp
fdasrvf/src/gropt/src/StieSoftICA.cpp
fdasrvf/src/gropt/src/ElasticCurvesRO.cpp
fdasrvf/src/gropt/src/L2SphereVector.cpp
fdasrvf/src/gropt/src/LowRankVector.cpp
fdasrvf/src/gropt/src/StieSumBrockett.cpp
fdasrvf/src/gropt/src/EucVector.cpp
fdasrvf/src/gropt/src/ObliqueVector.cpp
fdasrvf/src/gropt/src/SmartSpace.cpp
fdasrvf/src/gropt/src/Element.cpp
fdasrvf/src/gropt/src/ForDebug.cpp
fdasrvf/src/gropt/incl
fdasrvf/src/gropt/incl/randgen.h
fdasrvf/src/gropt/incl/Manifold.h
fdasrvf/src/gropt/incl/LRTRSR1.h
fdasrvf/src/gropt/incl/LowRank.h
fdasrvf/src/gropt/incl/StieSumBrockett.h
fdasrvf/src/gropt/incl/TestProduct.h
fdasrvf/src/gropt/incl/ElasticCurvesRO.h
fdasrvf/src/gropt/incl/StieVariable.h
fdasrvf/src/gropt/incl/StieVector.h
fdasrvf/src/gropt/incl/WeightedLowRank.h
fdasrvf/src/gropt/incl/RBFGS.h
fdasrvf/src/gropt/incl/RTRNewton.h
fdasrvf/src/gropt/incl/RWRBFGS.h
fdasrvf/src/gropt/incl/LinearOPE.h
fdasrvf/src/gropt/incl/TestElasticCurvesRO.h
fdasrvf/src/gropt/incl/TestWeightedLowRank.h
fdasrvf/src/gropt/incl/RBroydenFamily.h
fdasrvf/src/gropt/incl/ForDebug.h
fdasrvf/src/gropt/incl/StieBrockett.h
fdasrvf/src/gropt/incl/L2SphereVector.h
fdasrvf/src/gropt/incl/L2Sphere.h
fdasrvf/src/gropt/incl/TestStieSoftICA.h
fdasrvf/src/gropt/incl/LowRankVariable.h
fdasrvf/src/gropt/incl/EucVector.h
fdasrvf/src/gropt/incl/EucVariable.h
fdasrvf/src/gropt/incl/RNewton.h
fdasrvf/src/gropt/incl/SolversLS.h
fdasrvf/src/gropt/incl/OrthGroupVector.h
fdasrvf/src/gropt/incl/DriverElasticCurvesRO.h
fdasrvf/src/gropt/incl/RTRSD.h
fdasrvf/src/gropt/incl/EucFrechetMean.h
fdasrvf/src/gropt/incl/L2SphereVariable.h
fdasrvf/src/gropt/incl/TestSphereRayQuo.h
fdasrvf/src/gropt/incl/Solvers.h
fdasrvf/src/gropt/incl/mexProblem.h
fdasrvf/src/gropt/incl/Spline.h
fdasrvf/src/gropt/incl/ObliqueVariable.h
fdasrvf/src/gropt/incl/StieSoftICA.h
fdasrvf/src/gropt/incl/TestStieBrockett.h
fdasrvf/src/gropt/incl/DriverMexProb.h
fdasrvf/src/gropt/incl/Sphere.h
fdasrvf/src/gropt/incl/TestTestSparsePCA.h
fdasrvf/src/gropt/incl/TestEucQuadratic.h
fdasrvf/src/gropt/incl/SharedSpace.h
fdasrvf/src/gropt/incl/Timer.h
fdasrvf/src/gropt/incl/LowRankVector.h
fdasrvf/src/gropt/incl/ProductElement.h
fdasrvf/src/gropt/incl/TestEucFrechetMean.h
fdasrvf/src/gropt/incl/RSD.h
fdasrvf/src/gropt/incl/SphereVariable.h
fdasrvf/src/gropt/incl/ObliqueVector.h
fdasrvf/src/gropt/incl/SphereVector.h
fdasrvf/src/gropt/incl/Problem.h
fdasrvf/src/gropt/incl/SmartSpace.h
fdasrvf/src/gropt/incl/RCG.h
fdasrvf/src/gropt/incl/LRBFGS.h
fdasrvf/src/gropt/incl/ProductManifold.h
fdasrvf/src/gropt/incl/Stiefel.h
fdasrvf/src/gropt/incl/def.h
fdasrvf/src/gropt/incl/Oblique.h
fdasrvf/src/gropt/incl/EucQuadratic.h
fdasrvf/src/gropt/incl/SolversTR.h
fdasrvf/src/gropt/incl/ElasticCurvesReparam.h
fdasrvf/src/gropt/incl/RTRSR1.h
fdasrvf/src/gropt/incl/ObliqueTestSparsePCA.h
fdasrvf/src/gropt/incl/OrthGroup.h
fdasrvf/src/gropt/incl/Element.h
fdasrvf/src/gropt/incl/OrthGroupVariable.h
fdasrvf/src/gropt/incl/Euclidean.h
fdasrvf/NAMESPACE
fdasrvf/NEWS
fdasrvf/data
fdasrvf/data/toy_data.RData
fdasrvf/data/simu_data.RData
fdasrvf/data/simu_warp.RData
fdasrvf/data/mpeg7.RData
fdasrvf/data/datalist
fdasrvf/data/toy_warp.RData
fdasrvf/R
fdasrvf/R/srsf_to_f.R
fdasrvf/R/elastic.distance.R
fdasrvf/R/vertFPCA.R
fdasrvf/R/curve_functions.R
fdasrvf/R/bayesian_functions.R
fdasrvf/R/elastic_regression.R
fdasrvf/R/elastic_logistic.R
fdasrvf/R/function_group_warp_bayes.R
fdasrvf/R/function_mean_bayes.R
fdasrvf/R/warp_f_gamma.R
fdasrvf/R/pair_align_functions.R
fdasrvf/R/gauss_model.R
fdasrvf/R/image_funcs.R
fdasrvf/R/curve_karcher_cov.R
fdasrvf/R/warp_q_gamma.R
fdasrvf/R/align_fPCA.R
fdasrvf/R/sample_shapes.R
fdasrvf/R/outlier.detection.R
fdasrvf/R/rgam.R
fdasrvf/R/f_to_srvf.R
fdasrvf/R/horizFPCA.R
fdasrvf/R/reparam_image.R
fdasrvf/R/curve_principal_directions.R
fdasrvf/R/curve_geodesic.R
fdasrvf/R/reparam_curve.R
fdasrvf/R/curve_srvf_align.R
fdasrvf/R/SqrtMean.R
fdasrvf/R/calc_shape_dist.R
fdasrvf/R/regression_functions.R
fdasrvf/R/curve_to_q.R
fdasrvf/R/utility_functions.R
fdasrvf/R/q_to_curve.R
fdasrvf/R/elastic_mlogistic.R
fdasrvf/R/curve_pair_align.R
fdasrvf/R/gradient.R
fdasrvf/R/resamplecurve.R
fdasrvf/R/pair_align_functions_bayes.R
fdasrvf/R/elastic_prediction.R
fdasrvf/R/optimum.reparam.R
fdasrvf/R/pair_align_image.R
fdasrvf/R/curve_karcher_mean.R
fdasrvf/R/time_warping.R
fdasrvf/R/smooth.data.R
fdasrvf/R/fdasrvf-package.r
fdasrvf/README.md
fdasrvf/MD5
fdasrvf/DESCRIPTION
fdasrvf/man
fdasrvf/man/pair_align_functions_bayes.Rd
fdasrvf/man/curve_karcher_mean.Rd
fdasrvf/man/gradient.Rd
fdasrvf/man/reparam_curve.Rd
fdasrvf/man/reparam_image.Rd
fdasrvf/man/toy_warp.Rd
fdasrvf/man/smooth.data.Rd
fdasrvf/man/simu_warp.Rd
fdasrvf/man/toy_data.Rd
fdasrvf/man/warp_f_gamma.Rd
fdasrvf/man/vertFPCA.Rd
fdasrvf/man/curve_pair_align.Rd
fdasrvf/man/rgam.Rd
fdasrvf/man/curve_srvf_align.Rd
fdasrvf/man/gauss_model.Rd
fdasrvf/man/curve_principal_directions.Rd
fdasrvf/man/curve_to_q.Rd
fdasrvf/man/curve_geodesic.Rd
fdasrvf/man/time_warping.Rd
fdasrvf/man/sample_shapes.Rd
fdasrvf/man/elastic.distance.Rd
fdasrvf/man/pair_align_functions.Rd
fdasrvf/man/q_to_curve.Rd
fdasrvf/man/elastic.mlogistic.Rd
fdasrvf/man/srsf_to_f.Rd
fdasrvf/man/elastic.prediction.Rd
fdasrvf/man/horizFPCA.Rd
fdasrvf/man/optimum.reparam.Rd
fdasrvf/man/f_to_srvf.Rd
fdasrvf/man/align_fPCA.Rd
fdasrvf/man/SqrtMean.Rd
fdasrvf/man/beta.Rd
fdasrvf/man/function_group_warp_bayes.Rd
fdasrvf/man/simu_data.Rd
fdasrvf/man/resamplecurve.Rd
fdasrvf/man/elastic.regression.Rd
fdasrvf/man/pair_align_image.Rd
fdasrvf/man/warp_q_gamma.Rd
fdasrvf/man/curve_karcher_cov.Rd
fdasrvf/man/function_mean_bayes.Rd
fdasrvf/man/fdasrvf.Rd
fdasrvf/man/calc_shape_dist.Rd
fdasrvf/man/elastic.logistic.Rd
fdasrvf/man/outlier.detection.Rd