fdasrvf: Elastic Functional Data Analysis

Functions to support functional data analysis using the square root velocity framework.

AuthorJ. Derek Tucker <jdtuck@sandia.gov>
Date of publication2016-09-15 08:14:08
MaintainerJ. Derek Tucker <jdtuck@sandia.gov>
LicenseGPL-3
Version1.7.0

View on CRAN

Man pages

align_fPCA: Group-wise function alignment and PCA Extractions

beta: MPEG7 Curve Dataset

calc_shape_dist: Elastic Shape Distance

curve_geodesic: Form geodesic between two curvese

curve_karcher_cov: Curve Karcher Covariance

curve_karcher_mean: Karcher Mean of Curves

curve_pair_align: Pairwise align two curves

curve_principal_directions: Curve PCA

curve_srvf_align: Align Curves

curve_to_q: Convert to SRVF space

elastic.distance: Calculates two elastic distance

elastic.logistic: Elastic Logistic Regression

elastic.mlogistic: Elastic Multinomial Logistic Regression

elastic.prediction: Elastic Predicition from Regression Models

elastic.regression: Elastic Linear Regression

fdasrvf: Elastic Functional Data Analysis

f_to_srvf: Convert to SRSF

function_group_warp_bayes: Bayesian Group Warping

function_mean_bayes: Bayesian Karcher Mean Calculation

gauss_model: Gaussian model of functional data

gradient: Gradient using finite diferences

horizFPCA: Horizontal Functional Principal Component Analysis

optimum.reparam: Align two functions

outlier.detection: Outlier Detection

pair_align_functions: Align two functions

pair_align_functions_bayes: Align two functions

pair_align_image: Pairwise align two images This function aligns to images...

q_to_curve: Convert to curve space

reparam_curve: Align two curves

reparam_image: Find optimum reparameterization between two images

resamplecurve: Resample Curve

rgam: Random Warping

sample_shapes: Sample shapes from model

simu_data: Simulated two Gaussian Dataset

simu_warp: Aligned Simulated two Gaussian Dataset

smooth.data: Smooth Functions

SqrtMean: SRVF transform of warping functions

srsf_to_f: Convert SRSF to f

time_warping: Group-wise function alignment

toy_data: Distributed Gaussian Peak Dataset

toy_warp: Aligned Distributed Gaussian Peak Dataset

vertFPCA: Vertical Functional Principal Component Analysis

warp_f_gamma: Warp Function

warp_q_gamma: Warp SRSF

Files in this package

fdasrvf
fdasrvf/src
fdasrvf/src/Makevars
fdasrvf/src/fdaqmap
fdasrvf/src/fdaqmap/src
fdasrvf/src/fdaqmap/src/myVector.cpp
fdasrvf/src/fdaqmap/src/UnitSquareImage.cpp
fdasrvf/src/fdaqmap/incl
fdasrvf/src/fdaqmap/incl/myVector.h
fdasrvf/src/fdaqmap/incl/ImageRegister.h
fdasrvf/src/fdaqmap/incl/UnitSquareImage.h
fdasrvf/src/Makevars.win
fdasrvf/src/fdasrsf
fdasrvf/src/fdasrsf/bayesian.cpp
fdasrvf/src/fdasrsf/misc_funcs.h
fdasrvf/src/fdasrsf/DynamicProgrammingQ2.h
fdasrvf/src/fdasrsf/dp_grid.h
fdasrvf/src/fdasrsf/DynamicProgrammingQ2.cpp
fdasrvf/src/fdasrsf/mlogit_warp_grad.cpp
fdasrvf/src/fdasrsf/misc_funcs.cpp
fdasrvf/src/fdasrsf/mlogit_warp_grad.h
fdasrvf/src/fdasrsf/dp_grid.cpp
fdasrvf/src/fdasrsf/dp_nbhd.h
fdasrvf/src/wrapper.cpp
fdasrvf/src/gropt
fdasrvf/src/gropt/src
fdasrvf/src/gropt/src/ProductElement.cpp
fdasrvf/src/gropt/src/Oblique.cpp
fdasrvf/src/gropt/src/LRTRSR1.cpp
fdasrvf/src/gropt/src/Manifold.cpp
fdasrvf/src/gropt/src/randgen.cpp
fdasrvf/src/gropt/src/RSD.cpp
fdasrvf/src/gropt/src/RTRSD.cpp
fdasrvf/src/gropt/src/DriverMexProb.cpp
fdasrvf/src/gropt/src/StieVector.cpp
fdasrvf/src/gropt/src/RCG.cpp
fdasrvf/src/gropt/src/ProductManifold.cpp
fdasrvf/src/gropt/src/SharedSpace.cpp
fdasrvf/src/gropt/src/Timer.cpp
fdasrvf/src/gropt/src/SphereVector.cpp
fdasrvf/src/gropt/src/RWRBFGS.cpp
fdasrvf/src/gropt/src/L2Sphere.cpp
fdasrvf/src/gropt/src/RNewton.cpp
fdasrvf/src/gropt/src/LinearOPE.cpp
fdasrvf/src/gropt/src/StieBrockett.cpp
fdasrvf/src/gropt/src/Stiefel.cpp
fdasrvf/src/gropt/src/StieVariable.cpp
fdasrvf/src/gropt/src/EucVariable.cpp
fdasrvf/src/gropt/src/OrthGroupVariable.cpp
fdasrvf/src/gropt/src/EucFrechetMean.cpp
fdasrvf/src/gropt/src/ObliqueVariable.cpp
fdasrvf/src/gropt/src/OrthGroup.cpp
fdasrvf/src/gropt/src/Sphere.cpp
fdasrvf/src/gropt/src/ObliqueTestSparsePCA.cpp
fdasrvf/src/gropt/src/RBroydenFamily.cpp
fdasrvf/src/gropt/src/Problem.cpp
fdasrvf/src/gropt/src/RBFGS.cpp
fdasrvf/src/gropt/src/RTRSR1.cpp
fdasrvf/src/gropt/src/SolversTR.cpp
fdasrvf/src/gropt/src/Euclidean.cpp
fdasrvf/src/gropt/src/SolversLS.cpp
fdasrvf/src/gropt/src/Solvers.cpp
fdasrvf/src/gropt/src/EucQuadratic.cpp
fdasrvf/src/gropt/src/RTRNewton.cpp
fdasrvf/src/gropt/src/OrthGroupVector.cpp
fdasrvf/src/gropt/src/SphereVariable.cpp
fdasrvf/src/gropt/src/WeightedLowRank.cpp
fdasrvf/src/gropt/src/Spline.cpp
fdasrvf/src/gropt/src/LRBFGS.cpp
fdasrvf/src/gropt/src/DriverElasticCurvesRO.cpp
fdasrvf/src/gropt/src/ElasticCurvesReparam.cpp
fdasrvf/src/gropt/src/LowRank.cpp
fdasrvf/src/gropt/src/L2SphereVariable.cpp
fdasrvf/src/gropt/src/LowRankVariable.cpp
fdasrvf/src/gropt/src/TestElasticCurvesRO.cpp
fdasrvf/src/gropt/src/StieSoftICA.cpp
fdasrvf/src/gropt/src/ElasticCurvesRO.cpp
fdasrvf/src/gropt/src/L2SphereVector.cpp
fdasrvf/src/gropt/src/LowRankVector.cpp
fdasrvf/src/gropt/src/StieSumBrockett.cpp
fdasrvf/src/gropt/src/EucVector.cpp
fdasrvf/src/gropt/src/ObliqueVector.cpp
fdasrvf/src/gropt/src/SmartSpace.cpp
fdasrvf/src/gropt/src/Element.cpp
fdasrvf/src/gropt/src/ForDebug.cpp
fdasrvf/src/gropt/incl
fdasrvf/src/gropt/incl/randgen.h
fdasrvf/src/gropt/incl/Manifold.h
fdasrvf/src/gropt/incl/LRTRSR1.h
fdasrvf/src/gropt/incl/LowRank.h
fdasrvf/src/gropt/incl/StieSumBrockett.h
fdasrvf/src/gropt/incl/TestProduct.h
fdasrvf/src/gropt/incl/ElasticCurvesRO.h
fdasrvf/src/gropt/incl/StieVariable.h
fdasrvf/src/gropt/incl/StieVector.h
fdasrvf/src/gropt/incl/WeightedLowRank.h
fdasrvf/src/gropt/incl/RBFGS.h
fdasrvf/src/gropt/incl/RTRNewton.h
fdasrvf/src/gropt/incl/RWRBFGS.h
fdasrvf/src/gropt/incl/LinearOPE.h
fdasrvf/src/gropt/incl/TestElasticCurvesRO.h
fdasrvf/src/gropt/incl/TestWeightedLowRank.h
fdasrvf/src/gropt/incl/RBroydenFamily.h
fdasrvf/src/gropt/incl/ForDebug.h
fdasrvf/src/gropt/incl/StieBrockett.h
fdasrvf/src/gropt/incl/L2SphereVector.h
fdasrvf/src/gropt/incl/L2Sphere.h
fdasrvf/src/gropt/incl/TestStieSoftICA.h
fdasrvf/src/gropt/incl/LowRankVariable.h
fdasrvf/src/gropt/incl/EucVector.h
fdasrvf/src/gropt/incl/EucVariable.h
fdasrvf/src/gropt/incl/RNewton.h
fdasrvf/src/gropt/incl/SolversLS.h
fdasrvf/src/gropt/incl/OrthGroupVector.h
fdasrvf/src/gropt/incl/DriverElasticCurvesRO.h
fdasrvf/src/gropt/incl/RTRSD.h
fdasrvf/src/gropt/incl/EucFrechetMean.h
fdasrvf/src/gropt/incl/L2SphereVariable.h
fdasrvf/src/gropt/incl/TestSphereRayQuo.h
fdasrvf/src/gropt/incl/Solvers.h
fdasrvf/src/gropt/incl/mexProblem.h
fdasrvf/src/gropt/incl/Spline.h
fdasrvf/src/gropt/incl/ObliqueVariable.h
fdasrvf/src/gropt/incl/StieSoftICA.h
fdasrvf/src/gropt/incl/TestStieBrockett.h
fdasrvf/src/gropt/incl/DriverMexProb.h
fdasrvf/src/gropt/incl/Sphere.h
fdasrvf/src/gropt/incl/TestTestSparsePCA.h
fdasrvf/src/gropt/incl/TestEucQuadratic.h
fdasrvf/src/gropt/incl/SharedSpace.h
fdasrvf/src/gropt/incl/Timer.h
fdasrvf/src/gropt/incl/LowRankVector.h
fdasrvf/src/gropt/incl/ProductElement.h
fdasrvf/src/gropt/incl/TestEucFrechetMean.h
fdasrvf/src/gropt/incl/RSD.h
fdasrvf/src/gropt/incl/SphereVariable.h
fdasrvf/src/gropt/incl/ObliqueVector.h
fdasrvf/src/gropt/incl/SphereVector.h
fdasrvf/src/gropt/incl/Problem.h
fdasrvf/src/gropt/incl/SmartSpace.h
fdasrvf/src/gropt/incl/RCG.h
fdasrvf/src/gropt/incl/LRBFGS.h
fdasrvf/src/gropt/incl/ProductManifold.h
fdasrvf/src/gropt/incl/Stiefel.h
fdasrvf/src/gropt/incl/def.h
fdasrvf/src/gropt/incl/Oblique.h
fdasrvf/src/gropt/incl/EucQuadratic.h
fdasrvf/src/gropt/incl/SolversTR.h
fdasrvf/src/gropt/incl/ElasticCurvesReparam.h
fdasrvf/src/gropt/incl/RTRSR1.h
fdasrvf/src/gropt/incl/ObliqueTestSparsePCA.h
fdasrvf/src/gropt/incl/OrthGroup.h
fdasrvf/src/gropt/incl/Element.h
fdasrvf/src/gropt/incl/OrthGroupVariable.h
fdasrvf/src/gropt/incl/Euclidean.h
fdasrvf/NAMESPACE
fdasrvf/NEWS
fdasrvf/data
fdasrvf/data/toy_data.RData
fdasrvf/data/simu_data.RData
fdasrvf/data/simu_warp.RData
fdasrvf/data/mpeg7.RData
fdasrvf/data/datalist
fdasrvf/data/toy_warp.RData
fdasrvf/R
fdasrvf/R/srsf_to_f.R fdasrvf/R/elastic.distance.R fdasrvf/R/vertFPCA.R fdasrvf/R/curve_functions.R fdasrvf/R/bayesian_functions.R fdasrvf/R/elastic_regression.R fdasrvf/R/elastic_logistic.R fdasrvf/R/function_group_warp_bayes.R fdasrvf/R/function_mean_bayes.R fdasrvf/R/warp_f_gamma.R fdasrvf/R/pair_align_functions.R fdasrvf/R/gauss_model.R fdasrvf/R/image_funcs.R fdasrvf/R/curve_karcher_cov.R fdasrvf/R/warp_q_gamma.R fdasrvf/R/align_fPCA.R fdasrvf/R/sample_shapes.R fdasrvf/R/outlier.detection.R fdasrvf/R/rgam.R fdasrvf/R/f_to_srvf.R fdasrvf/R/horizFPCA.R fdasrvf/R/reparam_image.R fdasrvf/R/curve_principal_directions.R fdasrvf/R/curve_geodesic.R fdasrvf/R/reparam_curve.R fdasrvf/R/curve_srvf_align.R fdasrvf/R/SqrtMean.R fdasrvf/R/calc_shape_dist.R fdasrvf/R/regression_functions.R fdasrvf/R/curve_to_q.R fdasrvf/R/utility_functions.R fdasrvf/R/q_to_curve.R fdasrvf/R/elastic_mlogistic.R fdasrvf/R/curve_pair_align.R fdasrvf/R/gradient.R fdasrvf/R/resamplecurve.R fdasrvf/R/pair_align_functions_bayes.R fdasrvf/R/elastic_prediction.R fdasrvf/R/optimum.reparam.R fdasrvf/R/pair_align_image.R fdasrvf/R/curve_karcher_mean.R fdasrvf/R/time_warping.R fdasrvf/R/smooth.data.R
fdasrvf/R/fdasrvf-package.r
fdasrvf/README.md
fdasrvf/MD5
fdasrvf/DESCRIPTION
fdasrvf/man
fdasrvf/man/pair_align_functions_bayes.Rd fdasrvf/man/curve_karcher_mean.Rd fdasrvf/man/gradient.Rd fdasrvf/man/reparam_curve.Rd fdasrvf/man/reparam_image.Rd fdasrvf/man/toy_warp.Rd fdasrvf/man/smooth.data.Rd fdasrvf/man/simu_warp.Rd fdasrvf/man/toy_data.Rd fdasrvf/man/warp_f_gamma.Rd fdasrvf/man/vertFPCA.Rd fdasrvf/man/curve_pair_align.Rd fdasrvf/man/rgam.Rd fdasrvf/man/curve_srvf_align.Rd fdasrvf/man/gauss_model.Rd fdasrvf/man/curve_principal_directions.Rd fdasrvf/man/curve_to_q.Rd fdasrvf/man/curve_geodesic.Rd fdasrvf/man/time_warping.Rd fdasrvf/man/sample_shapes.Rd fdasrvf/man/elastic.distance.Rd fdasrvf/man/pair_align_functions.Rd fdasrvf/man/q_to_curve.Rd fdasrvf/man/elastic.mlogistic.Rd fdasrvf/man/srsf_to_f.Rd fdasrvf/man/elastic.prediction.Rd fdasrvf/man/horizFPCA.Rd fdasrvf/man/optimum.reparam.Rd fdasrvf/man/f_to_srvf.Rd fdasrvf/man/align_fPCA.Rd fdasrvf/man/SqrtMean.Rd fdasrvf/man/beta.Rd fdasrvf/man/function_group_warp_bayes.Rd fdasrvf/man/simu_data.Rd fdasrvf/man/resamplecurve.Rd fdasrvf/man/elastic.regression.Rd fdasrvf/man/pair_align_image.Rd fdasrvf/man/warp_q_gamma.Rd fdasrvf/man/curve_karcher_cov.Rd fdasrvf/man/function_mean_bayes.Rd fdasrvf/man/fdasrvf.Rd fdasrvf/man/calc_shape_dist.Rd fdasrvf/man/elastic.logistic.Rd fdasrvf/man/outlier.detection.Rd

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