svm: SVM

In feamiR: Classification and Feature Selection for microRNA/mRNA Interactions

Description

SVM

Usage

svm(
  data_train,
  data_test,
  kernel = "linear",
  degree = 3,
  poly = 0,
  includeplot = FALSE
)

Arguments

data_train	Training set: dataframe containing classification column and all other columns features. This is the dataset on which the decision tree model is trained.
data_test	Test set: dataframe containing classification column and all other columns features. This is the dataset on which the decision tree model in tested.
kernel	Type of kernel to use for SVM model (default:linear)
degree	Degree for kernel used (in polynomial or radial case)
poly	Binary parameter stating whether the chosen kernel is polynomial of degree greater than 1 (default:0)
includeplot	Show performance scatter plot (default:FALSE)

Value

List containing performance percentages, accessed using training (training accuracy), test (test accuracy), trainsensitivity, testsensitivity, trainspecificity, testspecificity.

Examples

data_train = data.frame(
      classification=as.factor(c(1,1,0,0,1,1,0,0,1,1)),
      A=c(1,1,1,0,0,0,1,1,1,0),
      B=c(0,1,1,0,1,1,0,1,1,0),
      C=c(0,0,1,0,0,1,0,0,1,0))
data_test = data.frame(
      classification=as.factor(c(1,1,0,0,1,1,1,0)),
      A=c(0,0,0,1,0,0,0,1),
      B=c(1,1,1,0,0,1,1,1),
      C=c(0,0,1,1,0,0,1,1))
svm(data_train,data_test,kernel='radial',degree=3)
svm(data_train,data_test,kernel='sigmoid')
svm(data_train,data_test,kernel='poly',degree=4,poly=1)

feamiR documentation built on Jan. 19, 2021, 9:08 a.m.