pca-helper: Helper functions for 'explore_space_pca()'

In ferrn: Facilitate Exploration of touRR optimisatioN

Helper functions for 'explore_space_pca()'

Description

Helper functions for 'explore_space_pca()'

Usage

flip_sign(dt, group = NULL, ...)

compute_pca(dt, group = NULL, random = TRUE, flip = TRUE, ...)

Arguments

dt	a data object collected by the projection pursuit guided tour optimisation in tourr
group	the variable to label different runs of the optimiser(s)
...	other arguments received from explore_space_pca()
random	logical; if random bases from the basis space need to be added to the data
flip	logical; if the sign flipping need to be performed

Value

flip_sign(): a list containing a matrix of all the bases, a logical value indicating whether a flip of sign is performed, and a data frame of the original dataset.

compute_pca(): a list containing the PCA summary and a data frame with PC coordinates augmented.

Examples

dt <- dplyr::bind_rows(holes_1d_geo, holes_1d_better)
 flip_sign(dt, group = method) %>% str(max = 1)
compute_pca(dt, group = method)

ferrn documentation built on June 24, 2024, 1:07 a.m.