fishtree_taxonomy: Get taxonomies and other data from the Fish Tree of Life

In fishtree: Interface to the Fish Tree of Life API

Description

Retrieves taxonomic and other information from the Fish Tree of Life API.

Usage

fishtree_taxonomy(ranks = NULL)

Arguments

ranks

One or more taxonomic ranks to retrieve.

Value

A list, with components containing data on the specified taxa. If 'ranks' is unspecified, a data frame with all valid taxa is returned instead.

References

Rabosky, D. L., Chang, J., Title, P. O., Cowman, P. F., Sallan, L., Friedman, M., Kashner, K., Garilao, C., Near, T. J., Coll, M., Alfaro, M. E. (2018). An inverse latitudinal gradient in speciation rate for marine fishes. Nature, 559(7714), 392–395. doi:10.1038/s41586-018-0273-1

Examples

## Not run: 
tax <- fishtree_taxonomy(rank = "Labridae")
n_total <- length(tax$Labridae$species)
n_sampl <- length(tax$Labridae$sampled_species)
paste("There are", n_sampl, "sampled species out of", n_total, "in wrasses.")

## End(Not run)

fishtree documentation built on Jan. 31, 2021, 1:06 a.m.