Description Usage Format Source Examples
Contains data for set of 384 SNP markers from Illumina GoldenGate arrays of 64 diploid potato varieties. SNP markers are identical to those in tetraploid dataset.
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A data frame with 24576 observations on the following 6 variables.
MarkerName
a factor with levels PotSNP001
to PotSNP384
SampleName
a factor with 64 levels
X_Raw
a numeric vector, raw intensity of first channel
Y_Raw
a numeric vector, raw intensity of second channel
Theta
a numeric vector, angle in (2/pi)*radials and first polar coordinate, obtained from GenomeStudio
R
a numeric vector, radius and second polar coordinate, obtained from GenomeStudio
Described in Anithakumari AM, J Tang, HJ van Eck, RFG Visser, JAM Leunissen, B Vosman, CG van der Linden (2010). A pipeline for high throughput detection and mapping of SNPs from EST databases. Mol. Breeding 26: 65-75
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