diplo.potato.SNP: SNP data for diploid potato
In fitTetra: fitTetra is an R package for assigning tetraploid genotype scores
Description
Usage
Format
Source
Examples
Description
Contains data for set of 384 SNP markers from Illumina GoldenGate arrays of 64 diploid potato varieties. SNP markers are identical to those in tetraploid dataset.
Usage
1
Format
A data frame with 24576 observations on the following 6 variables.
MarkerNamea factor with levels PotSNP001 to PotSNP384
SampleNamea factor with 64 levels
X_Rawa numeric vector, raw intensity of first channel
Y_Rawa numeric vector, raw intensity of second channel
Thetaa numeric vector, angle in (2/pi)*radials and first polar coordinate, obtained from GenomeStudio
Ra numeric vector, radius and second polar coordinate, obtained from GenomeStudio
Source
Described in Anithakumari AM, J Tang, HJ van Eck, RFG Visser, JAM Leunissen, B Vosman, CG van der Linden (2010). A pipeline for high throughput detection and mapping of SNPs from EST databases. Mol. Breeding 26: 65-75
Examples
1
fitTetra documentation built on May 2, 2019, 3:52 p.m.
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Description Usage Format Source Examples
Description
Contains data for set of 384 SNP markers from Illumina GoldenGate arrays of 64 diploid potato varieties. SNP markers are identical to those in tetraploid dataset.
Usage
1 |
Format
A data frame with 24576 observations on the following 6 variables.
MarkerNamea factor with levels
PotSNP001toPotSNP384SampleNamea factor with 64 levels
X_Rawa numeric vector, raw intensity of first channel
Y_Rawa numeric vector, raw intensity of second channel
Thetaa numeric vector, angle in (2/pi)*radials and first polar coordinate, obtained from GenomeStudio
Ra numeric vector, radius and second polar coordinate, obtained from GenomeStudio
Source
Described in Anithakumari AM, J Tang, HJ van Eck, RFG Visser, JAM Leunissen, B Vosman, CG van der Linden (2010). A pipeline for high throughput detection and mapping of SNPs from EST databases. Mol. Breeding 26: 65-75
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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