tetra.potato.SNP: SNP data for tetraploid potato
In fitTetra: fitTetra is an R package for assigning tetraploid genotype scores
Description
Usage
Format
Source
Examples
Description
Contains data for set of 384 SNP markers from Illumina GoldenGate arrays of 224 tetraploid potato varieties covering a wide range with respect to
geographic origin, year of first registration and intended application.
Usage
1
Format
A data frame with 86016 observations on the following 6 variables.
MarkerNamea factor with levels PotSNP001 to PotSNP384
SampleNamea factor with 224 levels
X_Rawa numeric vector, raw intensity of first channel
Y_Rawa numeric vector, raw intensity of second channel
Thetaa numeric vector, angle in (2/pi)*radials and first polar coordinate, obtained from GenomeStudio
Ra numeric vector, radius and second polar coordinate, obtained from GenomeStudio
Source
Described in Anithakumari AM, J Tang, HJ van Eck, RFG Visser, JAM Leunissen, B Vosman, CG van der Linden (2010). A pipeline for high throughput detection
and mapping of SNPs from EST databases. Mol. Breeding 26: 65-75
Examples
1
fitTetra documentation built on May 2, 2019, 3:52 p.m.
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Description Usage Format Source Examples
Description
Contains data for set of 384 SNP markers from Illumina GoldenGate arrays of 224 tetraploid potato varieties covering a wide range with respect to geographic origin, year of first registration and intended application.
Usage
1 |
Format
A data frame with 86016 observations on the following 6 variables.
MarkerNamea factor with levels
PotSNP001toPotSNP384SampleNamea factor with 224 levels
X_Rawa numeric vector, raw intensity of first channel
Y_Rawa numeric vector, raw intensity of second channel
Thetaa numeric vector, angle in (2/pi)*radials and first polar coordinate, obtained from GenomeStudio
Ra numeric vector, radius and second polar coordinate, obtained from GenomeStudio
Source
Described in Anithakumari AM, J Tang, HJ van Eck, RFG Visser, JAM Leunissen, B Vosman, CG van der Linden (2010). A pipeline for high throughput detection and mapping of SNPs from EST databases. Mol. Breeding 26: 65-75
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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