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README.md
In flashier: Empirical Bayes Matrix Factorization
flashier
Functions documentation and vignettes are available here.
Please note that function names changed in Version 0.2.44. If you are using flashier code from previous versions, please make the following substitutions, and note that many parameter names have changed as well:
Old Name | New Name
--- | ---
as.ebnm.fn | flash_ebnm
conv.crit.elbo | flash_conv_crit_elbo_diff
conv.crit.factors | flash_conv_crit_max_chg_F
conv.crit.loadings | flash_conv_crit_max_chg_L
display.elbo | flash_verbose_elbo
display.elbo.diff | flash_verbose_elbo_diff
display.F.max.chg | flash_verbose_max_chg_F
display.L.max.chg | flash_verbose_max_chg_L
display.max.chg | flash_verbose_max_chg
ff.elbo | flash_fit_get_elbo
ff.est.tau | flash_fit_get_est_tau
ff.fixed.tau | flash_fit_get_fixed_tau
ff.g | flash_fit_get_g
ff.KL | flash_fit_get_KL
ff.p2m | flash_fit_get_p2m
ff.pm | flash_fit_get_pm
ff.tau | flash_fit_get_tau
flash.add.greedy | flash_greedy
flash.backfit | flash_backfit
flash.fit | flash_fit
flash.fix.factors | flash_factors_fix
flash.init | flash_init
flash.init.factors | flash_factors_init
flash.nullcheck | flash_nullcheck
flash.remove.factors | flash_factors_remove
flash.reorder.factors | flash_factors_reorder
flash.set.factors.to.zero | flash_factors_set_to_zero
flash.set.verbose | flash_set_verbose
init.fn.default | flash_greedy_init_default
init.fn.irlba | flash_greedy_init_irlba
init.fn.softImpute | flash_greedy_init_softImpute
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flashier documentation built on Oct. 17, 2023, 5:07 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
flashier
Functions documentation and vignettes are available here.
Please note that function names changed in Version 0.2.44. If you are using flashier code from previous versions, please make the following substitutions, and note that many parameter names have changed as well:
Old Name | New Name --- | --- as.ebnm.fn | flash_ebnm conv.crit.elbo | flash_conv_crit_elbo_diff conv.crit.factors | flash_conv_crit_max_chg_F conv.crit.loadings | flash_conv_crit_max_chg_L display.elbo | flash_verbose_elbo display.elbo.diff | flash_verbose_elbo_diff display.F.max.chg | flash_verbose_max_chg_F display.L.max.chg | flash_verbose_max_chg_L display.max.chg | flash_verbose_max_chg ff.elbo | flash_fit_get_elbo ff.est.tau | flash_fit_get_est_tau ff.fixed.tau | flash_fit_get_fixed_tau ff.g | flash_fit_get_g ff.KL | flash_fit_get_KL ff.p2m | flash_fit_get_p2m ff.pm | flash_fit_get_pm ff.tau | flash_fit_get_tau flash.add.greedy | flash_greedy flash.backfit | flash_backfit flash.fit | flash_fit flash.fix.factors | flash_factors_fix flash.init | flash_init flash.init.factors | flash_factors_init flash.nullcheck | flash_nullcheck flash.remove.factors | flash_factors_remove flash.reorder.factors | flash_factors_reorder flash.set.factors.to.zero | flash_factors_set_to_zero flash.set.verbose | flash_set_verbose init.fn.default | flash_greedy_init_default init.fn.irlba | flash_greedy_init_irlba init.fn.softImpute | flash_greedy_init_softImpute
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R Package Documentation
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