flash_set_timeout: Set timeout

In flashier: Empirical Bayes Matrix Factorization

Set timeout

Description

Used in a flash pipeline to set a maximum amount of fitting time. Note that timeout conditions are only checked during greedy fits and backfits, so that the total amount of fitting time can exceed the time set by flash_set_timeout (especially if, for example, there is a nullcheck involving many factor/loading pairs). Also note that timeout conditions must be cleared using function flash_clear_timeout before any re-fitting is attempted.

Usage

flash_set_timeout(
  flash,
  tim,
  units = c("hours", "secs", "mins", "days", "weeks")
)

Arguments

flash	A flash or flash_fit object.
tim	A numeric value giving the maximum amount of fitting time, with the units of time specified by parameter units.
units	The units of time according to which parameter tim is to be interpreted.

Value

The flash object from argument flash, with the timeout settings reflected in updates to the "internal" flash_fit object. These settings will persist across all subsequent calls to flash_xxx functions until they are modified either by flash_clear_timeout or by another call to flash_set_timeout.

Examples

fl <- flash_init(gtex) %>%
  flash_set_timeout(1, "secs") %>%
  flash_greedy(Kmax = 30) %>%
  flash_backfit() %>%
  flash_nullcheck() %>%
  flash_clear_timeout() # Always clear timeout at the end of a pipeline.

flashier documentation built on Oct. 17, 2023, 5:07 p.m.