distancefactor: Factor for dissimilarity of mixed type data

In fpc: Flexible Procedures for Clustering

Factor for dissimilarity of mixed type data

Description

Computes a factor that can be used to standardise ordinal categorical variables and binary dummy variables coding categories of nominal scaled variables for Euclidean dissimilarity computation in mixed type data. See Hennig and Liao (2013).

Usage

distancefactor(cat,n=NULL, catsizes=NULL,type="categorical",
               normfactor=2,qfactor=ifelse(type=="categorical",1/2,
                             1/(1+1/(cat-1))))

Arguments

cat	integer. Number of categories of the variable to be standardised. Note that for type="categorical" the number of categories of the original variable is required, although the distancefactor is used to standardise dummy variables for the categories.
n	integer. Number of data points.
catsizes	vector of integers giving numbers of observations per category. One of n and catsizes must be supplied. If catsizes=NULL, rep(round(n/cat),cat) is used (this may be appropriate as well if numbers of observations of categories are unequal, if the researcher decides that the dissimilarity measure should not be influenced by empirical category sizes.
type	"categorical" if the factor is used for dummy variables belonging to a nominal variable, "ordinal" if the factor is used for an ordinal variable ind standard Likert coding.
normfactor	numeric. Factor on which standardisation is based. As a default, this is E(X_1-X_2)^2=2 for independent unit variance variables.
qfactor	numeric. Factor q in Hennig and Liao (2013) to adjust for clumping effects due to discreteness.

Value

A factor by which to multiply the variable in order to make it comparable to a unit variance continuous variable when aggregated in Euclidean fashion for dissimilarity computation, so that expected effective difference between two realisations of the variable equals qfactor*normfactor.

Author(s)

Christian Hennig [e-mail] https://www.unibo.it/sitoweb/christian.hennig/en

References

Hennig, C. and Liao, T. (2013) How to find an appropriate clustering for mixed-type variables with application to socio-economic stratification, Journal of the Royal Statistical Society, Series C Applied Statistics, 62, 309-369.

See Also

lcmixed, pam

Examples

  set.seed(776655)
  d1 <- sample(1:5,20,replace=TRUE)
  d2 <- sample(1:4,20,replace=TRUE)
  ldata <- cbind(d1,d2)
  lc <- cat2bin(ldata,categorical=1)$data
  lc[,1:5] <- lc[,1:5]*distancefactor(5,20,type="categorical")
  lc[,6] <- lc[,6]*distancefactor(4,20,type="ordinal")

fpc documentation built on Sept. 24, 2024, 9:07 a.m.