freqpcr: Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples

Interval estimation of the population allele frequency from qPCR analysis based on the restriction enzyme digestion (RED)-DeltaDeltaCq method (Osakabe et al. 2017, <doi:10.1016/j.pestbp.2017.04.003>), as well as general DeltaDeltaCq analysis. Compatible with the Cq measurement of DNA extracted from multiple individuals at once, so called "group-testing", this model assumes that the quantity of DNA extracted from an individual organism follows a gamma distribution. Therefore, the point estimate is robust regarding the uncertainty of the DNA yield.

Package details

AuthorMasaaki Sudo [aut, cre] (<>)
MaintainerMasaaki Sudo <>
LicenseGPL (>= 3)
Package repositoryView on CRAN
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freqpcr documentation built on March 18, 2022, 7:25 p.m.