Man pages for freqpcr
Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples
| CqFreq-class | Output object of 'freqpcr()'. |
| CqList-class | S4 class storing the dummy Cq data for performance test. |
| dot-freqpcr_loglike | Log-likelihood of obtaining Cq values under given parameter... |
| dot-freqpcr_loglike_cont | Log-likelihood when sample allele ratio is continuous. |
| dot-integrate_beta | Integration of likelihood function based on the beta... |
| dot-integrate_gamma | Double integration of likelihood over the two DNA quantities... |
| dot-knownqpcr_loglike | Log-likelihood of getting Cq values when exact allele mixing... |
| dot-knownqpcr_loglike_duo | Log-likelihood of getting Cq values when exact allele mixing... |
| freqpcr | Estimate population allele frequency from the set of Cq... |
| freqpcr-package | The freqpcr package |
| knownqpcr | Estimate auxiliary parameters using samples with known allele... |
| knownqpcr_unpaired | Estimate auxiliary parameters when the sample pairs are... |
| make_dummy | Generate dummy DNA dataset ready for allele-frequency... |
| sim_dummy | Simulate freqpcr estimation based on user-generated dummy... |
