Estimates Allele Frequency on qPCR DeltaDeltaCq from Bulk Samples

CqFreq-class | Output object of 'freqpcr()'. |

CqList-class | S4 class storing the dummy Cq data for performance test. |

dot-freqpcr_loglike | Log-likelihood of obtaining Cq values under given parameter... |

dot-freqpcr_loglike_cont | Log-likelihood when sample allele ratio is continuous. |

dot-integrate_beta | Integration of likelihood function based on the beta... |

dot-integrate_gamma | Double integration of likelihood over the two DNA quantities... |

dot-knownqpcr_loglike | Log-likelihood of getting Cq values when exact allele mixing... |

dot-knownqpcr_loglike_duo | Log-likelihood of getting Cq values when exact allele mixing... |

freqpcr | Estimate population allele frequency from the set of Cq... |

freqpcr-package | The freqpcr package |

knownqpcr | Estimate auxiliary parameters using samples with known allele... |

knownqpcr_unpaired | Estimate auxiliary parameters when the sample pairs are... |

make_dummy | Generate dummy DNA dataset ready for allele-frequency... |

sim_dummy | Simulate freqpcr estimation based on user-generated dummy... |

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