Nothing
## ISSUE 10
##
## Fixed 11.05.2022 - ???
##
## This happens only when run in R CMD check
## Does not matter with which data set is run. However, it works
## fine in the examples for carikeplot()!
library(fsdaR)
data(flea)
Y <- as.matrix(flea[, 1:(ncol(flea)-1)]) # select only the numeric variables
rownames(Y) <- 1:nrow(Y)
head(Y)
(out <- tclustIC(Y, whichIC="CLACLA", plot=FALSE, alpha=0.1, nsamp=100))
##
> ### Name: tclustIC
> ### Title: Performs cluster analysis by calling 'tclustfsda' for different
> ### number of groups 'k' and restriction factors 'c'
> ### Aliases: tclustIC
>
> ### ** Examples
>
> ## Not run:
> ##D data(geyser2)
> ##D out <- tclustIC(geyser2, whichIC="MIXMIX", plot=FALSE, alpha=0.1)
> ##D out
> ##D summary(out)
> ##D
> ## End(Not run)
>
> data(flea)
> Y <- as.matrix(flea[, 1:(ncol(flea)-1)]) # select only the numeric variables
> rownames(Y) <- 1:nrow(Y)
> head(Y)
tars1 tars2 head aede1 aede2 aede3
1 191 131 53 150 15 104
2 185 134 50 147 13 105
3 200 137 52 144 14 102
4 173 127 50 144 16 97
5 171 118 49 153 13 106
6 160 118 47 140 15 99
>
> (out <- tclustIC(Y, whichIC="CLACLA", plot=FALSE, alpha=0.1, nsamp=100))
This is the very first call to the FSDA engine,
it can take some time to initialize it ...
k=1
k=2
k=3
k=4
k=5
Error using gcp (line 49)
Java exception occurred:
java.lang.IllegalStateException: An application can only use one MCR component that uses Parallel Computing Toolbox functionality.
at com.mathworks.toolbox.distcomp.util.MatlabRefStore.initMatlabRef(MatlabRefStore.java:50)
Error in tclustIC (line 196)
Error in .jcall(fsdaEngine, returnType, fsdaFunction, as.integer(nargout), :
com.mathworks.toolbox.javabuilder.MWException: Java exception occurred:
java.lang.IllegalStateException: An application can only use one MCR component that uses Parallel Computing Toolbox functionality.
at com.mathworks.toolbox.distcomp.util.MatlabRefStore.initMatlabRef(MatlabRefStore.java:50)
Calls: tclustIC -> callFsdaFunction -> .jcall -> .jcheck
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ...
'fsdaR-transreg_PA2.Rmd' using 'UTF-8'... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR
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