cv.multiFSSEMiPALM: cv.multiFSSEMiPALM

Description Usage Arguments Value

View source: R/solver.R

Description

cv.multiFSSEMiPALM

Usage

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cv.multiFSSEMiPALM(Xs, Ys, Bs, Fs, Sk, sigma2, nlambda = 20, nrho = 20,
  nfold = 5, p, q, wt = TRUE, plot = FALSE)

Arguments

Xs

eQTL matrices

Ys

Gene expression matrices

Bs

initialized GRN-matrices

Fs

initialized eQTL effect matrices

Sk

eQTL index of genes

sigma2

initialized noise variance

nlambda

number of hyper-parameter of lasso term in CV

nrho

number of hyper-parameter of fused-lasso term in CV

nfold

CVfold number. Default 5/10

p

number of genes

q

number of eQTLs

wt

use adaptive lasso or not. Default TRUE.

plot

plot contour of cvmean or not. Default FALSE.

Value

list of cross-validation result


fssemR documentation built on Dec. 4, 2019, 5:06 p.m.