cv.multiFSSEMiPALM2: cv.multiFSSEMiPALM2

In fssemR: Fused Sparse Structural Equation Models to Jointly Infer Gene Regulatory Network

cv.multiFSSEMiPALM2

Description

cv.multiFSSEMiPALM2

Usage

cv.multiFSSEMiPALM2(
  Xs,
  Ys,
  Bs,
  Fs,
  Sk,
  sigma2,
  nlambda = 20,
  nrho = 20,
  nfold = 5,
  p,
  q,
  wt = TRUE,
  plot = FALSE
)

Arguments

Xs	eQTL matrices
Ys	Gene expression matrices
Bs	initialized GRN-matrices
Fs	initialized eQTL effect matrices
Sk	eQTL index of genes
sigma2	initialized noise variance
nlambda	number of hyper-parameter of lasso term in CV
nrho	number of hyper-parameter of fused-lasso term in CV
nfold	CVfold number. Default 5/10
p	number of genes
q	number of eQTLs
wt	use adaptive lasso or not. Default TRUE.
plot	plot contour of cvmean or not. Default FALSE.

Value

list of cross-validation result

fssemR documentation built on March 18, 2022, 7:24 p.m.