Description Usage Arguments Details Value Author(s) References See Also Examples
This function can be used for encoding the barcode sequences with gap-pair compositional features. This is an alternative function to seq_funbarRF
and seq_funbarRF_manual
functions.
1 | encGPC (bar_seq)
|
bar_seq |
Barcode sequences of class DNAStringSet. |
The user has to supply the barcode sequences in FASTA format, the class of which must be of DNAString type. It can also be an object generated using read_seq_txt
function.
test |
A dataframe of N rows and 96 columns, where N is the number of input sequences supplied by the user. |
Prabina Kumar Meher, Division of Statistical Genetics,Indian Agricultural Statistics Research Institute, New Delhi-110012, INDIA
Li H. (2016). BioSeqClass: Classification for biological Sequences. R package version 1.32.0.
seq_funbarRF
, seq_funbarRF_manual
1 2 3 4 |
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