read_seq_txt: Conversion of DNA sequences of character types to...

In funbarRF: Fungal Species Identification using DNA Barcode with Random Forest

Description

This function can be used for conversion of sequence dataset of character types to DNAString format.

Usage

read_seq_txt (seq.file)

Arguments

seq.file

A character vector of barcode sequences.

Value

The function returns input sequences in DNAString format.

Author(s)

Prabina Kumar Meher, Division of Statistical Genetics,Indian Agricultural Statistics Research Institute, New Delhi-110012, INDIA

References

1. Pages H., Aboyoun P., Gentleman R., and DebRoy S. (2016). Biostrings: String objects representing biological sequences, and matching algorithms. R package version 2.42.1.

See Also

DNAStringSet, readDNAStringSet, XStringSet, writeXStringSet

Examples

data (fun_dat)
bs <- c("AATG","ATTGCCGTA","TTGAACGAAT","TGGCATTG")
read_seq_txt (bs)
kk <- read_seq_txt (fun_dat$seq)

funbarRF documentation built on May 27, 2019, 5:03 p.m.