Computes functional rarity indices as proposed by Violle et al (accepted). Various indices can be computed using both regional and local information. Functional Rarity combines both the functional aspect of rarity as well as the extent aspect of rarity.

Install the latest version of this package by entering the following in R:

`install.packages("funrar")`

Author | Matthias GreniĆ© [aut, cre], Pierre Denelle [aut], Caroline Tucker [aut] |

Date of publication | 2016-11-24 11:57:58 |

Maintainer | Matthias GreniĆ© <matthias.grenie@gmail.com> |

License | GPL (>= 2) |

Version | 1.0.2 |

https://github.com/Rekyt/funrar |

**compute_dist_matrix:** Functional Distance Matrix

**distinctiveness:** Functional Distinctiveness on site-species matrix

**distinctiveness_com:** Functional Distinctiveness for a single community

**distinctiveness_stack:** Functional Distinctiveness on a stacked data.frame

**funrar:** Functional Rarity Indices

**funrar_stack:** Functional Rarity indices on stacked data.frame

**make_absolute:** Abundance matrix from relative abundances matrix

**make_relative:** Relative abundance matrix from absolute abundance matrix

**matrix_to_stack:** Matrix to stacked (= tidy) data.frame

**restrictedness:** Geographical Restrictedness on site-species matrix

**restrictedness_stack:** Geographical Restrictedness for stacked data.frame

**scarcity:** Scarcity on site-species matrix

**scarcity_com:** Scarcity for a single community

**scarcity_stack:** Scarcity

**stack_to_matrix:** Stacked (= tidy) data.frame to matrix

**uniqueness:** Functional Uniqueness for site-sepcies matrix matrix

**uniqueness_stack:** Functional Uniqueness on stacked data.frame

compute_dist_matrix | Man page |

distance_matrix | Man page |

distinctiveness | Man page |

distinctiveness_com | Man page |

distinctiveness_stack | Man page |

funrar | Man page |

funrar_stack | Man page |

make_absolute | Man page |

make_relative | Man page |

matrix_to_stack | Man page |

matrix_to_tidy | Man page |

restrictedness | Man page |

restrictedness_stack | Man page |

scarcity | Man page |

scarcity_com | Man page |

scarcity_stack | Man page |

stack_to_matrix | Man page |

tidy_to_matrix | Man page |

uniqueness | Man page |

uniqueness_stack | Man page |

inst

inst/doc

inst/doc/rarity_indices.Rmd

inst/doc/sparse_matrices.html

inst/doc/sparse_matrices.Rmd

inst/doc/sparse_matrices.R
inst/doc/rarity_indices.html

inst/doc/rarity_indices.R
tests

tests/testthat.R
tests/testthat

tests/testthat/test-check_functions.R
tests/testthat/test-rarity_indices.R
tests/testthat/test-dist_matrix.R
tests/testthat/test-rel_abund.R
tests/testthat/test-tidy_matrix.R
NAMESPACE

NEWS.md

R

R/compute_dist_matrix.R
R/distinctiveness.R
R/funrar.R
R/restrictedness.R
R/make_relative.R
R/stack_matrix.R
R/check_functions.R
R/uniqueness.R
R/scarcity.R
vignettes

vignettes/figures

vignettes/figures/funrar_scheme.png

vignettes/rarity_indices.Rmd

vignettes/sparse_matrices.Rmd

README.md

MD5

build

build/vignette.rds

DESCRIPTION

man

man/distinctiveness_com.Rd
man/restrictedness_stack.Rd
man/uniqueness.Rd
man/make_absolute.Rd
man/funrar_stack.Rd
man/distinctiveness.Rd
man/scarcity_stack.Rd
man/restrictedness.Rd
man/funrar.Rd
man/stack_to_matrix.Rd
man/scarcity_com.Rd
man/compute_dist_matrix.Rd
man/uniqueness_stack.Rd
man/distinctiveness_stack.Rd
man/scarcity.Rd
man/make_relative.Rd
man/matrix_to_stack.Rd
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.

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