funrar: Functional Rarity Indices Computation

Share:

Computes functional rarity indices as proposed by Violle et al (accepted). Various indices can be computed using both regional and local information. Functional Rarity combines both the functional aspect of rarity as well as the extent aspect of rarity.

Author
Matthias GreniƩ [aut, cre], Pierre Denelle [aut], Caroline Tucker [aut]
Date of publication
2016-11-24 11:57:58
Maintainer
Matthias GreniƩ <matthias.grenie@gmail.com>
License
GPL (>= 2)
Version
1.0.2
URLs

View on CRAN

Man pages

compute_dist_matrix
Functional Distance Matrix
distinctiveness
Functional Distinctiveness on site-species matrix
distinctiveness_com
Functional Distinctiveness for a single community
distinctiveness_stack
Functional Distinctiveness on a stacked data.frame
funrar
Functional Rarity Indices
funrar_stack
Functional Rarity indices on stacked data.frame
make_absolute
Abundance matrix from relative abundances matrix
make_relative
Relative abundance matrix from absolute abundance matrix
matrix_to_stack
Matrix to stacked (= tidy) data.frame
restrictedness
Geographical Restrictedness on site-species matrix
restrictedness_stack
Geographical Restrictedness for stacked data.frame
scarcity
Scarcity on site-species matrix
scarcity_com
Scarcity for a single community
scarcity_stack
Scarcity
stack_to_matrix
Stacked (= tidy) data.frame to matrix
uniqueness
Functional Uniqueness for site-sepcies matrix matrix
uniqueness_stack
Functional Uniqueness on stacked data.frame

Files in this package

funrar
funrar/inst
funrar/inst/doc
funrar/inst/doc/rarity_indices.Rmd
funrar/inst/doc/sparse_matrices.html
funrar/inst/doc/sparse_matrices.Rmd
funrar/inst/doc/sparse_matrices.R
funrar/inst/doc/rarity_indices.html
funrar/inst/doc/rarity_indices.R
funrar/tests
funrar/tests/testthat.R
funrar/tests/testthat
funrar/tests/testthat/test-check_functions.R
funrar/tests/testthat/test-rarity_indices.R
funrar/tests/testthat/test-dist_matrix.R
funrar/tests/testthat/test-rel_abund.R
funrar/tests/testthat/test-tidy_matrix.R
funrar/NAMESPACE
funrar/NEWS.md
funrar/R
funrar/R/compute_dist_matrix.R
funrar/R/distinctiveness.R
funrar/R/funrar.R
funrar/R/restrictedness.R
funrar/R/make_relative.R
funrar/R/stack_matrix.R
funrar/R/check_functions.R
funrar/R/uniqueness.R
funrar/R/scarcity.R
funrar/vignettes
funrar/vignettes/figures
funrar/vignettes/figures/funrar_scheme.png
funrar/vignettes/rarity_indices.Rmd
funrar/vignettes/sparse_matrices.Rmd
funrar/README.md
funrar/MD5
funrar/build
funrar/build/vignette.rds
funrar/DESCRIPTION
funrar/man
funrar/man/distinctiveness_com.Rd
funrar/man/restrictedness_stack.Rd
funrar/man/uniqueness.Rd
funrar/man/make_absolute.Rd
funrar/man/funrar_stack.Rd
funrar/man/distinctiveness.Rd
funrar/man/scarcity_stack.Rd
funrar/man/restrictedness.Rd
funrar/man/funrar.Rd
funrar/man/stack_to_matrix.Rd
funrar/man/scarcity_com.Rd
funrar/man/compute_dist_matrix.Rd
funrar/man/uniqueness_stack.Rd
funrar/man/distinctiveness_stack.Rd
funrar/man/scarcity.Rd
funrar/man/make_relative.Rd
funrar/man/matrix_to_stack.Rd