fwsim: Fisher-Wright Population Simulation

Simulates a population under the Fisher-Wright model (fixed or stochastic population size) with a one-step neutral mutation process (stepwise mutation model, logistic mutation model and exponential mutation model supported). The stochastic population sizes are random Poisson distributed and different kinds of population growth are supported. For the stepwise mutation model, it is possible to specify locus and direction specific mutation rate (in terms of upwards and downwards mutation rate). Intermediate generations can be saved in order to study e.g. drift.

AuthorMikkel Meyer Andersen and Poul Svante Eriksen
Date of publication2015-01-16 18:12:07
MaintainerMikkel Meyer Andersen <mikl@math.aau.dk>
LicenseGPL-2
Version0.3.3

View on CRAN

Functions

approx_stationary_dist Man page
fwsim Man page
fwsim_fixed Man page
fwsim-package Man page
init_mutmodel Man page
mutmodel_dw_mut Man page
mutmodel_not_mut Man page
mutmodel_up_mut Man page
plot.fwsim Man page
print.fwsim Man page
print.mutmodel Man page
summary.fwsim Man page

Files

fwsim
fwsim/src
fwsim/src/Makevars
fwsim/src/common.h
fwsim/src/print.h
fwsim/src/fwpopsim.cpp
fwsim/src/fwpopsim.h
fwsim/src/mutationmodels.h
fwsim/src/fwpopsim_fixed.cpp
fwsim/src/fwpopsim_fixed.h
fwsim/src/print.cpp
fwsim/src/Makevars.win
fwsim/src/RcppExports.cpp
fwsim/src/mutationmodels.cpp
fwsim/NAMESPACE
fwsim/NEWS
fwsim/R
fwsim/R/plot.R fwsim/R/RcppExports.R fwsim/R/print.R fwsim/R/mutmodel.R fwsim/R/summary.R fwsim/R/fwsim.R fwsim/R/init_mutmodel.R
fwsim/MD5
fwsim/DESCRIPTION
fwsim/man
fwsim/man/mutmodel.Rd fwsim/man/fwsim-package.Rd fwsim/man/init_mutmodel.Rd fwsim/man/fwsim.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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