fwsim: Fisher-Wright Population Simulation
Version 0.3.3

Simulates a population under the Fisher-Wright model (fixed or stochastic population size) with a one-step neutral mutation process (stepwise mutation model, logistic mutation model and exponential mutation model supported). The stochastic population sizes are random Poisson distributed and different kinds of population growth are supported. For the stepwise mutation model, it is possible to specify locus and direction specific mutation rate (in terms of upwards and downwards mutation rate). Intermediate generations can be saved in order to study e.g. drift.

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AuthorMikkel Meyer Andersen and Poul Svante Eriksen
Date of publication2015-01-16 18:12:07
MaintainerMikkel Meyer Andersen <mikl@math.aau.dk>
LicenseGPL-2
Version0.3.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("fwsim")

Man pages

fwsim: Fisher-Wright Population Simulation
fwsim-package: Haplotype tools
init_mutmodel: init_mutmodel
mutmodel: Mutation model logic

Functions

Cpp_fwpopsim Source code
Cpp_fwpopsim_fixed Source code
approx_stationary_dist Man page Source code
fwsim Man page Source code
fwsim-package Man page
fwsim_fixed Man page Source code
init_mutmodel Man page Source code
mutmodel_dw_mut Man page Source code
mutmodel_not_mut Man page Source code
mutmodel_up_mut Man page Source code
plot.fwsim Man page Source code
print.fwsim Man page Source code
print.mutmodel Man page Source code
summary.fwsim Man page Source code
verify_arguments Source code

Files

src
src/Makevars
src/common.h
src/print.h
src/fwpopsim.cpp
src/fwpopsim.h
src/mutationmodels.h
src/fwpopsim_fixed.cpp
src/fwpopsim_fixed.h
src/print.cpp
src/Makevars.win
src/RcppExports.cpp
src/mutationmodels.cpp
NAMESPACE
NEWS
R
R/plot.R
R/RcppExports.R
R/print.R
R/mutmodel.R
R/summary.R
R/fwsim.R
R/init_mutmodel.R
MD5
DESCRIPTION
man
man/mutmodel.Rd
man/fwsim-package.Rd
man/init_mutmodel.Rd
man/fwsim.Rd
fwsim documentation built on May 19, 2017, 5 p.m.