fwsim: Fisher-Wright Population Simulation

Simulates a population under the Fisher-Wright model (fixed or stochastic population size) with a one-step neutral mutation process (stepwise mutation model, logistic mutation model and exponential mutation model supported). The stochastic population sizes are random Poisson distributed and different kinds of population growth are supported. For the stepwise mutation model, it is possible to specify locus and direction specific mutation rate (in terms of upwards and downwards mutation rate). Intermediate generations can be saved in order to study e.g. drift.

Author
Mikkel Meyer Andersen and Poul Svante Eriksen
Date of publication
2015-01-16 18:12:07
Maintainer
Mikkel Meyer Andersen <mikl@math.aau.dk>
License
GPL-2
Version
0.3.3

View on CRAN

Man pages

fwsim
Fisher-Wright Population Simulation
fwsim-package
Haplotype tools
init_mutmodel
init_mutmodel
mutmodel
Mutation model logic

Files in this package

fwsim
fwsim/src
fwsim/src/Makevars
fwsim/src/common.h
fwsim/src/print.h
fwsim/src/fwpopsim.cpp
fwsim/src/fwpopsim.h
fwsim/src/mutationmodels.h
fwsim/src/fwpopsim_fixed.cpp
fwsim/src/fwpopsim_fixed.h
fwsim/src/print.cpp
fwsim/src/Makevars.win
fwsim/src/RcppExports.cpp
fwsim/src/mutationmodels.cpp
fwsim/NAMESPACE
fwsim/NEWS
fwsim/R
fwsim/R/plot.R
fwsim/R/RcppExports.R
fwsim/R/print.R
fwsim/R/mutmodel.R
fwsim/R/summary.R
fwsim/R/fwsim.R
fwsim/R/init_mutmodel.R
fwsim/MD5
fwsim/DESCRIPTION
fwsim/man
fwsim/man/mutmodel.Rd
fwsim/man/fwsim-package.Rd
fwsim/man/init_mutmodel.Rd
fwsim/man/fwsim.Rd