g2f: Find and Fill Gaps in Metabolic Networks

For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database <http://www.genome.jp/kegg/> is available.

Getting started

Package details

AuthorDaniel Osorio [aut, cre], Kelly Botero [aut], Janneth Gonzalez [aut, ths], Andres Pinzon [aut]
MaintainerDaniel Osorio <dcosorioh@unal.edu.co>
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the g2f package in your browser

Any scripts or data that you put into this service are public.

g2f documentation built on May 2, 2019, 3:45 p.m.