blockedReactions: Identify blocked reactions in a metabolic network

In g2f: Find and Fill Gaps in Metabolic Networks

Description

A blocked reaction in a metabolic network is a reaction that not participate in any optimization solution. This function set as objective function each one of the reactions (one by time) in the model, and identifies the reactions without flux under all scenarios.

Usage

blockedReactions(model)

Arguments

model

A valid model for the 'sybil' package. An object of class modelorg.

Value

A vector with the reaction ids of the blocked reactions

Author(s)

Andres Pinzon-Velasco <[e-mail]> - Mantainer: Daniel Camilo Osorio <[e-mail]>

Examples

## Not run: 
# Loading a model for the 'sybil' package
data("Ec_core")

# Identifying blocked reactions
blockedReactions(Ec_core)
## End(Not run)

g2f documentation built on May 2, 2019, 3:45 p.m.