uniprot2pfam: From UniProt ID to Pfam-A domain composition

In g3viz: Interactively Visualize Genetic Mutation Data using a Lollipop-Diagram

From UniProt ID to Pfam-A domain composition

Description

Map from UniProt ID to Pfam-A domain composition.

Usage

uniprot2pfam(uniprot.id)

Arguments

uniprot.id

UniProt ID

Value

a data frame with columns

• uniprot — UniProt ID

• length — protein length

• hmm.acc — accession number of Pfam HMM model, e.g., PF08563

• hmm.name — Pfam name, e.g., P53_TAD

• start — Pfam domain start position

• end — Pfam domain end position

• type — Pfam type, including domain/motif/family

Examples

uniprot2pfam("Q5VWM5")  # PRAMEF9; PRAMEF15
uniprot2pfam("P04637")

g3viz documentation built on Sept. 11, 2024, 9:25 p.m.