gRapfa: Acyclic Probabilistic Finite Automata
Version 1.0

gRapfa is for modelling discrete longitudinal data using acyclic probabilistic finite automata (APFA). The package contains functions for constructing APFA models from a given data using penalized likelihood methods. For graphical display of APFA models, gRapfa depends on 'igraph package'. gRapfa also contains an interface function to Beagle software that implements an efficient model selection algorithm.

AuthorSmitha Ankinakatte <Smitha.AA@agrsci.dk> and David Edwards <David.Edwards@agrsci.dk>
Date of publication2014-04-11 22:47:57
MaintainerSmitha Ankinakatte <Smitha.AA@agrsci.dk>
LicenseGPL (>= 2)
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("gRapfa")

Getting started

Package overview

Popular man pages

cross.validate: K - cross validation
fit.APFA: Fitting an APFA igraph object to data
gRapfa-package: Models for discrete longitudinal data using APFA.
LogLike.APFA: Log likelihood for an APFA model
MergeNodes: Merge given node set of an APFA
st: Sample tree
Wheeze: Wheeze in Steubenville children
See all...

All man pages Function index File listing

Man pages

add.stats: Add attributes to an APFA
apfa2NS: APFA to node symbol array
BioFam: Biographical survey of family life states
contract.last.level: Contract last level
cross.validate: K - cross validation
dIC: Difference in information criteria
fit.APFA: Fitting an APFA igraph object to data
getXY: To get XY co-ordinates for the igraph plots.
gRapfa-package: Models for discrete longitudinal data using APFA.
KL: Kullback-Leibler divergence for APFA models
LogLike.APFA: Log likelihood for an APFA model
merge2nodes: Merge two nodes
MergeNodes: Merge given node set of an APFA
MergeSelect: Selection of nodes to merged at a level
mildew.raw: A cross between two isolates of the barley powdery Mildew...
select.beagle: Select APFA using Beagle
select.IC: Selection of APFA model using penalised likelihood criteria
simulateAPFA: Simulation of data from an APFA model
st: Sample tree
Wheeze: Wheeze in Steubenville children

Functions

BioFam Man page
KL Man page Source code
LogLike.APFA Man page Source code
MergeNodes Man page Man page Source code
MergeSelect Man page Source code
Wheeze Man page
add.stats Man page Source code
apfa2NS Man page Source code
contract.last.level Man page Source code
cross.validate Man page Source code
dIC Man page Source code
fit.APFA Man page Source code
gRapfa Man page
gRapfa-package Man page
getXY Man page Source code
merge2nodes Man page Man page Source code
mildew.raw Man page
select.IC Man page Source code
select.beagle Man page Source code
simulateAPFA Man page Source code
st Man page Source code

Files

NAMESPACE
data
data/mildew.raw.RData
data/Wheeze.RData
data/BioFam.RData
R
R/APFAfunctions.R
MD5
DESCRIPTION
man
man/contract.last.level.Rd
man/st.Rd
man/merge2nodes.Rd
man/select.beagle.Rd
man/simulateAPFA.Rd
man/MergeSelect.Rd
man/gRapfa-package.Rd
man/BioFam.Rd
man/getXY.Rd
man/fit.APFA.Rd
man/apfa2NS.Rd
man/LogLike.APFA.Rd
man/dIC.Rd
man/mildew.raw.Rd
man/add.stats.Rd
man/cross.validate.Rd
man/Wheeze.Rd
man/select.IC.Rd
man/KL.Rd
man/MergeNodes.Rd
gRapfa documentation built on May 19, 2017, 6:59 p.m.

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